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Trimeric Domain-swapped Barnase

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Specialty Science
Date 1999 Feb 3
PMID 9927651
Citations 20
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Abstract

The structure of a trimeric domain-swapped form of barnase (EC 3.1. 27.3) was determined by x-ray crystallography at a resolution of 2.2 A from crystals of space group R32. Residues 1-36 of one molecule associate with residues 41-110 from another molecule related through threefold symmetry. The resulting cyclic trimer contains three protein folds that are very similar to those in monomeric barnase. Both swapped domains contain a nucleation site for folding. The formation of a domain-swapped trimer is consistent with the description of the folding process of monomeric barnase as the formation and subsequent association of two foldons.

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References
1.
Janin J, Miller S, Chothia C . Surface, subunit interfaces and interior of oligomeric proteins. J Mol Biol. 1988; 204(1):155-64. DOI: 10.1016/0022-2836(88)90606-7. View

2.
Mauguen Y, Hartley R, Dodson E, Dodson G, Bricogne G, Chothia C . Molecular structure of a new family of ribonucleases. Nature. 1982; 297(5862):162-4. DOI: 10.1038/297162a0. View

3.
Sanz J, Johnson C, Fersht A . The A-state of barnase. Biochemistry. 1994; 33(37):11189-99. DOI: 10.1021/bi00203a015. View

4.
Zegers I, Haikal A, Palmer R, Wyns L . Crystal structure of RNase T1 with 3'-guanylic acid and guanosine. J Biol Chem. 1994; 269(1):127-33. View

5.
Sancho J, Fersht A . Dissection of an enzyme by protein engineering. The N and C-terminal fragments of barnase form a native-like complex with restored enzymic activity. J Mol Biol. 1992; 224(3):741-7. DOI: 10.1016/0022-2836(92)90558-2. View