» Articles » PMID: 9852140

Spatial and Temporal Dynamics of DNA Replication Sites in Mammalian Cells

Overview
Journal J Cell Biol
Specialty Cell Biology
Date 1998 Dec 16
PMID 9852140
Citations 122
Authors
Affiliations
Soon will be listed here.
Abstract

Fluorescence microscopic analysis of newly replicated DNA has revealed discrete granular sites of replication (RS). The average size and number of replication sites from early to mid S-phase suggest that each RS contains numerous replicons clustered together. We are using fluorescence laser scanning confocal microscopy in conjunction with multidimensional image analysis to gain more precise information about RS and their spatial-temporal dynamics. Using a newly improved imaging segmentation program, we report an average of approximately 1,100 RS after a 5-min pulse labeling of 3T3 mouse fibroblast cells in early S-phase. Pulse-chase-pulse double labeling experiments reveal that RS take approximately 45 min to complete replication. Appropriate calculations suggest that each RS contains an average of 1 mbp of DNA or approximately 6 average-sized replicons. Double pulse-double chase experiments demonstrate that the DNA sequences replicated at individual RS are precisely maintained temporally and spatially as the cell progresses through the cell cycle and into subsequent generations. By labeling replicated DNA at the G1/S borders for two consecutive cell generations, we show that the DNA synthesized at early S-phase is replicated at the same time and sites in the next round of replication.

Citing Articles

Supervised and unsupervised deep learning-based approaches for studying DNA replication spatiotemporal dynamics.

Ng-Kee-Kwong J, Philps B, Smith F, Sobieska A, Chen N, Alabert C Commun Biol. 2025; 8(1):311.

PMID: 40011665 PMC: 11865476. DOI: 10.1038/s42003-025-07744-2.


The location and development of Replicon Cluster Domains in early replicating DNA.

da Costa-Nunes J, Gierlinski M, Sasaki T, Haagensen E, Gilbert D, Blow J Wellcome Open Res. 2023; 8:158.

PMID: 37766844 PMC: 10521077. DOI: 10.12688/wellcomeopenres.18742.2.


CapsNetYY1: identifying YY1-mediated chromatin loops based on a capsule network architecture.

Zhang Z, Li F, Zhao J, Zheng C BMC Genomics. 2023; 24(1):448.

PMID: 37559017 PMC: 10410878. DOI: 10.1186/s12864-023-09217-4.


Fiber-Like Organization as a Basic Principle for Euchromatin Higher-Order Structure.

Zakirov A, Sosnovskaya S, Ryumina E, Kharybina E, Strelkova O, Zhironkina O Front Cell Dev Biol. 2022; 9:784440.

PMID: 35174159 PMC: 8841976. DOI: 10.3389/fcell.2021.784440.


Laminin β2 Chain Regulates Cell Cycle Dynamics in the Developing Retina.

Serjanov D, Bachay G, Hunter D, Brunken W Front Cell Dev Biol. 2022; 9:802593.

PMID: 35096830 PMC: 8790539. DOI: 10.3389/fcell.2021.802593.


References
1.
Roberge M, Gasser S . DNA loops: structural and functional properties of scaffold-attached regions. Mol Microbiol. 1992; 6(4):419-23. DOI: 10.1111/j.1365-2958.1992.tb01485.x. View

2.
Kill I, Bridger J, Campbell K, Maldonado-Codina G, Hutchison C . The timing of the formation and usage of replicase clusters in S-phase nuclei of human diploid fibroblasts. J Cell Sci. 1991; 100 ( Pt 4):869-76. DOI: 10.1242/jcs.100.4.869. View

3.
Aten J, Bakker P, Stap J, Boschman G, Veenhof C . DNA double labelling with IdUrd and CldUrd for spatial and temporal analysis of cell proliferation and DNA replication. Histochem J. 1992; 24(5):251-9. DOI: 10.1007/BF01046839. View

4.
Laemmli U, Kas E, Poljak L, Adachi Y . Scaffold-associated regions: cis-acting determinants of chromatin structural loops and functional domains. Curr Opin Genet Dev. 1992; 2(2):275-85. DOI: 10.1016/s0959-437x(05)80285-0. View

5.
Neri L, Mazzotti G, Capitani S, Maraldi N, Cinti C, Baldini N . Nuclear matrix-bound replicational sites detected in situ by 5-bromodeoxyuridine. Histochemistry. 1992; 98(1):19-32. DOI: 10.1007/BF00716934. View