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Recommendations for the Presentation of NMR Structures of Proteins and Nucleic Acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy

Overview
Journal J Biomol NMR
Publisher Springer
Date 1998 Sep 8
PMID 9729785
Citations 168
Authors
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Abstract

The recommendations presented here are designed to support easier communication of NMR data and NMR structures of proteins and nucleic acids through unified nomenclature and reporting standards. Much of this document pertains to the reporting of data in journal articles; however, in the interest of the future development of structural biology, it is desirable that the bulk of the reported information be stored in computer-accessible form and be freely accessible to the scientific community in standardized formats for data exchange. These recommendations stem from an IUPAC-IUBMB-IUPAB inter-union venture with the direct involvement of ICSU and CODATA. The Task Group has reviewed previous formal recommendations and has extended them in the light of more recent developments in the field of biomolecular NMR spectroscopy. Drafts of the recommendations presented here have been examined critically by more than 50 specialists in the field and have gone through two rounds of extensive modification to incorporate suggestions and criticisms.

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References
1.
BELL L, Maccallum P . Pyrrolidine ring puckering in cis and trans-proline residues in proteins and polypeptides. Different puckers are favoured in certain situations. J Mol Biol. 1992; 228(3):725-34. DOI: 10.1016/0022-2836(92)90859-i. View

2.
. Nomenclature Committee of the International Union of Biochemistry (NC-IUB). Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations 1984. Eur J Biochem. 1985; 150(1):1-5. DOI: 10.1111/j.1432-1033.1985.tb08977.x. View

3.
Wishart D, Bigam C, Yao J, Abildgaard F, Dyson H, Oldfield E . 1H, 13C and 15N chemical shift referencing in biomolecular NMR. J Biomol NMR. 1995; 6(2):135-40. DOI: 10.1007/BF00211777. View

4.
Clauwaert J, Xia J . Straightening out the dihedral angles. Trends Biochem Sci. 1993; 18(9):317-8. DOI: 10.1016/0968-0004(93)90063-s. View

5.
Wuthrich K, Billeter M, Braun W . Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance. J Mol Biol. 1983; 169(4):949-61. DOI: 10.1016/s0022-2836(83)80144-2. View