Palme J, Li A, Springer M
Nat Metab. 2025; 7(1):137-147.
PMID: 39762390
PMC: 11774755.
DOI: 10.1038/s42255-024-01181-x.
Moyung K, Li Y, Hartemink A, MacAlpine D
bioRxiv. 2024; .
PMID: 38826400
PMC: 11142231.
DOI: 10.1101/2024.05.24.595391.
Vandermeulen M, Cullen P
mSphere. 2023; 8(5):e0028423.
PMID: 37732804
PMC: 10597418.
DOI: 10.1128/msphere.00284-23.
Sun X, Yu J, Zhu C, Mo X, Sun Q, Yang D
Elife. 2023; 12.
PMID: 36723430
PMC: 9925049.
DOI: 10.7554/eLife.84155.
Folsz O, Lin C, Task D, Riabinina O, Potter C
Methods Mol Biol. 2022; 2540:35-78.
PMID: 35980572
DOI: 10.1007/978-1-0716-2541-5_2.
D-Xylose Sensing in : Insights from D-Glucose Signaling and Native D-Xylose Utilizers.
Brink D, Borgstrom C, Persson V, Osiro K, Gorwa-Grauslund M
Int J Mol Sci. 2021; 22(22).
PMID: 34830296
PMC: 8625115.
DOI: 10.3390/ijms222212410.
Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation.
Hong J, Palme J, Hua B, Springer M
PLoS Comput Biol. 2021; 17(9):e1008691.
PMID: 34570755
PMC: 8496860.
DOI: 10.1371/journal.pcbi.1008691.
Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair in the absence of DNA replication.
Tripuraneni V, Memisoglu G, MacAlpine H, Tran T, Zhu W, Hartemink A
Genome Res. 2021; 31(5):775-788.
PMID: 33811083
PMC: 8092003.
DOI: 10.1101/gr.271155.120.
Computational study on ratio-sensing in yeast galactose utilization pathway.
Hong J, Hua B, Springer M, Tang C
PLoS Comput Biol. 2020; 16(12):e1007960.
PMID: 33275601
PMC: 7744065.
DOI: 10.1371/journal.pcbi.1007960.
Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering.
Zhao E, Lalwani M, Lovelett R, Garcia-Echauri S, Hoffman S, Gonzalez C
ACS Synth Biol. 2020; 9(12):3254-3266.
PMID: 33232598
PMC: 10399620.
DOI: 10.1021/acssynbio.0c00305.
Sugar Sensing and Signaling in and .
Van Ende M, Wijnants S, Van Dijck P
Front Microbiol. 2019; 10:99.
PMID: 30761119
PMC: 6363656.
DOI: 10.3389/fmicb.2019.00099.
Multi-component gene network design as a survival strategy in diverse environments.
Luo X, Song R, Acar M
BMC Syst Biol. 2018; 12(1):85.
PMID: 30257679
PMC: 6158886.
DOI: 10.1186/s12918-018-0609-3.
Pentose Metabolism in Saccharomyces cerevisiae: The Need to Engineer Global Regulatory Systems.
Endalur Gopinarayanan V, Nair N
Biotechnol J. 2018; 14(1):e1800364.
PMID: 30171750
PMC: 6452637.
DOI: 10.1002/biot.201800364.
A role for the transcription factor Mca1 in activating the meiosis-specific copper transporter Mfc1.
Beaudoin J, Ioannoni R, Normant V, Labbe S
PLoS One. 2018; 13(8):e0201861.
PMID: 30086160
PMC: 6080790.
DOI: 10.1371/journal.pone.0201861.
Genetic and Epigenetic Strategies Potentiate Gal4 Activation to Enhance Fitness in Recently Diverged Yeast Species.
Sood V, Brickner J
Curr Biol. 2017; 27(23):3591-3602.e3.
PMID: 29153325
PMC: 5846685.
DOI: 10.1016/j.cub.2017.10.035.
Noise reduction facilitated by dosage compensation in gene networks.
Peng W, Song R, Acar M
Nat Commun. 2016; 7:12959.
PMID: 27694830
PMC: 5063963.
DOI: 10.1038/ncomms12959.
Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network.
Kuang M, Hutchins P, Russell J, Coon J, Hittinger C
Elife. 2016; 5.
PMID: 27690225
PMC: 5089864.
DOI: 10.7554/eLife.19027.
Analyzing negative feedback using a synthetic gene network expressed in the Drosophila melanogaster embryo.
Jermusyk A, Murphy N, Reeves G
BMC Syst Biol. 2016; 10(1):85.
PMID: 27576572
PMC: 5006508.
DOI: 10.1186/s12918-016-0330-z.
Improving pentose fermentation by preventing ubiquitination of hexose transporters in Saccharomyces cerevisiae.
Nijland J, Vos E, Shin H, de Waal P, Klaassen P, Driessen A
Biotechnol Biofuels. 2016; 9:158.
PMID: 27468310
PMC: 4962381.
DOI: 10.1186/s13068-016-0573-3.
The transcription factor GCN4 regulates PHM8 and alters triacylglycerol metabolism in Saccharomyces cerevisiae.
Yadav K, Rajasekharan R
Curr Genet. 2016; 62(4):841-851.
PMID: 26979516
DOI: 10.1007/s00294-016-0590-6.