Kasalo N, Domazet-Loso T, Domazet-Loso M
Int J Mol Sci. 2025; 26(5).
PMID: 40076905
PMC: 11900164.
DOI: 10.3390/ijms26052285.
Wang W, Zhang D
Evol Lett. 2025; 9(1):137-149.
PMID: 39906584
PMC: 11790228.
DOI: 10.1093/evlett/qrae061.
Buric F, Viknander S, Fu X, Lemke O, Carmona O, Zrimec J
Protein Sci. 2024; 34(1):e5239.
PMID: 39665261
PMC: 11635393.
DOI: 10.1002/pro.5239.
Lynch M, Trickovic B, Kempes C
Sci Rep. 2022; 12(1):22586.
PMID: 36585440
PMC: 9803686.
DOI: 10.1038/s41598-022-23626-7.
Lynch M, Trickovic B
J Mol Biol. 2020; 432(7):1861-1879.
PMID: 32087200
PMC: 8025685.
DOI: 10.1016/j.jmb.2020.02.006.
System analysis of salt and osmotic stress induced proteins in and .
Kaithwas V, Bhardwaj K, Gupta D, Bhargava S
J Genet Eng Biotechnol. 2019; 15(1):231-237.
PMID: 30647659
PMC: 6296593.
DOI: 10.1016/j.jgeb.2016.12.007.
Biosynthetic energy cost for amino acids decreases in cancer evolution.
Zhang H, Wang Y, Li J, Chen H, He X, Zhang H
Nat Commun. 2018; 9(1):4124.
PMID: 30297703
PMC: 6175916.
DOI: 10.1038/s41467-018-06461-1.
Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.
Bazzini A, Del Viso F, Moreno-Mateos M, Johnstone T, Vejnar C, Qin Y
EMBO J. 2016; 35(19):2087-2103.
PMID: 27436874
PMC: 5048347.
DOI: 10.15252/embj.201694699.
Characterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting.
Wang Q, Heizer E, Rosa B, Wildman S, Janetka J, Mitreva M
Infect Genet Evol. 2016; 39:201-211.
PMID: 26829384
PMC: 4789095.
DOI: 10.1016/j.meegid.2016.01.025.
Effects of varying nitrogen sources on amino acid synthesis costs in Arabidopsis thaliana under different light and carbon-source conditions.
Arnold A, Sajitz-Hermstein M, Nikoloski Z
PLoS One. 2015; 10(2):e0116536.
PMID: 25706533
PMC: 4338252.
DOI: 10.1371/journal.pone.0116536.
Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production.
Arnold A, Nikoloski Z
Plant Physiol. 2014; 165(3):1380-1391.
PMID: 24808102
PMC: 4081344.
DOI: 10.1104/pp.114.235358.
Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways.
Van der Veen D, Lo J, Brown S, Johnson C, Tschaplinski T, Martin M
J Ind Microbiol Biotechnol. 2013; 40(7):725-34.
PMID: 23645383
DOI: 10.1007/s10295-013-1275-5.
Metabolic and translational efficiency in microbial organisms.
Raiford D, Heizer Jr E, Miller R, Doom T, Raymer M, Krane D
J Mol Evol. 2012; 74(3-4):206-16.
PMID: 22538926
DOI: 10.1007/s00239-012-9500-9.
Molecular basis of essential amino acid transport from studies of insect nutrient amino acid transporters of the SLC6 family (NAT-SLC6).
Boudko D
J Insect Physiol. 2012; 58(4):433-49.
PMID: 22230793
PMC: 3397479.
DOI: 10.1016/j.jinsphys.2011.12.018.
Amino acid biosynthetic cost and protein conservation.
Heizer Jr E, Raymer M, Krane D
J Mol Evol. 2011; 72(5-6):466-73.
PMID: 21604162
DOI: 10.1007/s00239-011-9445-4.
Economical evolution: microbes reduce the synthetic cost of extracellular proteins.
Smith D, Chapman M
mBio. 2010; 1(3).
PMID: 20824102
PMC: 2932507.
DOI: 10.1128/mBio.00131-10.
A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana.
Sajitz-Hermstein M, Nikoloski Z
Bioinformatics. 2010; 26(18):i582-8.
PMID: 20823325
PMC: 2935400.
DOI: 10.1093/bioinformatics/btq390.
Evolutionary systems biology of amino acid biosynthetic cost in yeast.
Barton M, Delneri D, Oliver S, Rattray M, Bergman C
PLoS One. 2010; 5(8):e11935.
PMID: 20808905
PMC: 2923148.
DOI: 10.1371/journal.pone.0011935.
Cysteine residues exposed on protein surfaces are the dominant intramitochondrial thiol and may protect against oxidative damage.
Requejo R, Hurd T, Costa N, Murphy M
FEBS J. 2010; 277(6):1465-80.
PMID: 20148960
PMC: 2847196.
DOI: 10.1111/j.1742-4658.2010.07576.x.
The antimalarial drug quinine disrupts Tat2p-mediated tryptophan transport and causes tryptophan starvation.
Khozoie C, Pleass R, Avery S
J Biol Chem. 2009; 284(27):17968-74.
PMID: 19416971
PMC: 2709357.
DOI: 10.1074/jbc.M109.005843.
