Mitochondrial Mutational Spectra in Human Cells and Tissues
Overview
Affiliations
We have found that human organs such as colon, lung, and muscle, as well as their derived tumors, share nearly all mitochondrial hotspot point mutations. Seventeen hotspots, primarily G --> A and A --> G transitions, have been identified in the mitochondrial sequence of base pairs 10,030-10,130. Mutant fractions increase with the number of cell generations in a human B cell line, TK6, indicating that they are heritable changes. The mitochondrial point mutation rate appears to be more than two orders of magnitude higher than the nuclear point mutation rate in TK6 cells and in human tissues. The similarity of the hotspot sets in vivo and in vitro leads us to conclude that human mitochondrial point mutations in the sequence studied are primarily spontaneous in origin and arise either from DNA replication error or reactions of DNA with endogenous metabolites. The predominance of transition mutations and the high number of hotspots in this short sequence resembles spectra produced by DNA polymerases in vitro.
scMitoMut for calling mitochondrial lineage-related mutations in single cells.
Sun W, van Ginneken D, Perie L Brief Bioinform. 2025; 26(1).
PMID: 40036721 PMC: 11878546. DOI: 10.1093/bib/bbaf072.
DNA repair pathways in the mitochondria.
King D, Copeland W DNA Repair (Amst). 2025; 146:103814.
PMID: 39914164 PMC: 11848857. DOI: 10.1016/j.dnarep.2025.103814.
Structural basis for DNA proofreading.
Buchel G, Nayak A, Herbine K, Sarfallah A, Sokolova V, Zamudio-Ochoa A Nat Commun. 2023; 14(1):8501.
PMID: 38151585 PMC: 10752894. DOI: 10.1038/s41467-023-44198-8.
Are some mutations more equal than others?.
Cote-LHeureux A, Maithania Y, Franco M, Khrapko K Elife. 2023; 12.
PMID: 37074148 PMC: 10115439. DOI: 10.7554/eLife.87194.
Genetics of Oocyte Maturation Defects and Early Embryo Development Arrest.
Solovova O, Chernykh V Genes (Basel). 2022; 13(11).
PMID: 36360157 PMC: 9689903. DOI: 10.3390/genes13111920.