New Evidence That the Hydrophobic Effect and Dispersion Are Not Major Driving Forces for Nucleotide Base Stacking
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"End-to-end" stacking of small dsRNA.
Erlenbach N, Grunewald C, Krstic B, Heckel A, Prisner T RNA. 2018; 25(2):239-246.
PMID: 30404925 PMC: 6348986. DOI: 10.1261/rna.068130.118.
Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.
Guckian K, Schweitzer B, Ren R, Sheils C, Tahmassebi D, Kool E J Am Chem Soc. 2010; 122(10):2213-2222.
PMID: 20865137 PMC: 2943206. DOI: 10.1021/ja9934854.
Predicting helical coaxial stacking in RNA multibranch loops.
Tyagi R, Mathews D RNA. 2007; 13(7):939-51.
PMID: 17507661 PMC: 1894924. DOI: 10.1261/rna.305307.
Structural specificity conferred by a group I RNA peripheral element.
Johnson T, Tijerina P, Chadee A, Herschlag D, Russell R Proc Natl Acad Sci U S A. 2005; 102(29):10176-81.
PMID: 16009943 PMC: 1177367. DOI: 10.1073/pnas.0501498102.
Vasiliskov V, Prokopenko D, Mirzabekov A Nucleic Acids Res. 2001; 29(11):2303-13.
PMID: 11376149 PMC: 55716. DOI: 10.1093/nar/29.11.2303.