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New Evidence That the Hydrophobic Effect and Dispersion Are Not Major Driving Forces for Nucleotide Base Stacking

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 1996 Dec 1
PMID 8968621
Citations 7
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References
1.
Tazawa I, Koike T, Inoue Y . Stacking properties of a highly hydrophobic dinucleotide sequence, N6, N6-dimethyladenylyl(3' leads to 5')N6, N6-dimethyladenosine, occurring in 16--18-S ribosomal RNA. Eur J Biochem. 1980; 109(1):33-8. DOI: 10.1111/j.1432-1033.1980.tb04764.x. View

2.
Hanlon S . The importance of London dispersion forces in the maintenance of the deoxyribonucleic acid helix. Biochem Biophys Res Commun. 1966; 23(6):861-7. DOI: 10.1016/0006-291x(66)90567-5. View

3.
Crothers D, Ratner D . Thermodynamic studies of a model system for hydrophobic bonding. Biochemistry. 1968; 7(5):1823-7. DOI: 10.1021/bi00845a029. View

4.
Bugg C, Thomas J, Sundaralingam M, Rao S . Stereochemistry of nucleic acids and their constituents. X. Solid-state base-stacking patterns in nucleic acid constituents and polynucleotides. Biopolymers. 1971; 10(1):175-219. DOI: 10.1002/bip.360100113. View

5.
Friedman R, Honig B . A free energy analysis of nucleic acid base stacking in aqueous solution. Biophys J. 1995; 69(4):1528-35. PMC: 1236383. DOI: 10.1016/S0006-3495(95)80023-8. View