The Effect of Conformation on Membrane Permeability of an Acyloxyalkoxy-linked Cyclic Prodrug of a Model Hexapeptide
Overview
Affiliations
Purpose: To determine the different conformations of the acyloxyalkoxy-linked cyclic prodrug 1 of the model hexapeptide 2 in solution and to investigate the relationship between these solution conformations and the cellular permeability characteristics of this prodrug.
Methods: Two-dimensional Homonuclear Hartmann-Hahn spectroscopy, Rotating-Frame Overhouser effect spectroscopy, circular dichroism and molecular dynamics simulations were used to find the solution conformers of cyclic prodrug 1.
Results: Our spectroscopic findings suggest that cyclic prodrug 1 exhibits a major and a minor conformer in solution. The major conformer appears to have a well-defined secondary structure, which involves a beta-turn and 4-->1 intramolecular hydrogen bond, creating a compact structure with a reduced average hydrodynamic radius compared to the model hexapeptide 2.
Conclusions: The increased ability of cyclic prodrug 1 to permeate membranes compared to the model hexapeptide 2 could be due to reduction in the average hydrodynamic radius of the molecule facilitating paracellular flux and/or the reduction in the hydrogen bonding potential facilitating transcellular flux.
Stephanie F, Tambunan U, Kuczera K, Siahaan T Pharmaceuticals (Basel). 2024; 17(11).
PMID: 39598454 PMC: 11597662. DOI: 10.3390/ph17111545.
Linker S, Schellhaas C, Kamenik A, Veldhuizen M, Waibl F, Roth H J Med Chem. 2023; 66(4):2773-2788.
PMID: 36762908 PMC: 9969412. DOI: 10.1021/acs.jmedchem.2c01837.
Linker S, Schellhaas C, Ries B, Roth H, Fouche M, Rodde S RSC Adv. 2022; 12(10):5782-5796.
PMID: 35424539 PMC: 8981571. DOI: 10.1039/d1ra09025a.
Laksitorini M, Prasasty V, Kiptoo P, Siahaan T Ther Deliv. 2014; 5(10):1143-63.
PMID: 25418271 PMC: 4445828. DOI: 10.4155/tde.14.67.
Modeling kinetics of subcellular disposition of chemicals.
Balaz S Chem Rev. 2009; 109(5):1793-899.
PMID: 19265398 PMC: 2682929. DOI: 10.1021/cr030440j.