Luebbert L, Pachter L
Bioinformatics. 2023; 39(1).
PMID: 36610989
PMC: 9835474.
DOI: 10.1093/bioinformatics/btac836.
Dara S, Dhamercherla S, Jadav S, Babu C, Ahsan M
Artif Intell Rev. 2021; 55(3):1947-1999.
PMID: 34393317
PMC: 8356896.
DOI: 10.1007/s10462-021-10058-4.
Cappelli E, Felici G, Weitschek E
BioData Min. 2018; 11:22.
PMID: 30386434
PMC: 6203208.
DOI: 10.1186/s13040-018-0184-6.
Casaregola S, Vasilenko A, Romano P, Robert V, Ozerskaya S, Kopf A
Springerplus. 2016; 5(1):772.
PMID: 27386258
PMC: 4912550.
DOI: 10.1186/s40064-016-2450-8.
Piovesan A, Caracausi M, Ricci M, Strippoli P, Vitale L, Pelleri M
DNA Res. 2015; 22(6):495-503.
PMID: 26581719
PMC: 4675715.
DOI: 10.1093/dnares/dsv028.
BioDB extractor: customized data extraction system for commonly used bioinformatics databases.
Karbhal R, Sawant S, Kulkarni-Kale U
BioData Min. 2015; 8:31.
PMID: 26516349
PMC: 4624652.
DOI: 10.1186/s13040-015-0067-z.
The EMBL-EBI bioinformatics web and programmatic tools framework.
Li W, Cowley A, Uludag M, Gur T, McWilliam H, Squizzato S
Nucleic Acids Res. 2015; 43(W1):W580-4.
PMID: 25845596
PMC: 4489272.
DOI: 10.1093/nar/gkv279.
Intelligent Access to Sequence and Structure Databases (IASSD) - an interface for accessing information from major web databases.
Ganguli S, Gupta M, Basu P, Banik R, Singh P, Vishal V
Bioinformation. 2015; 10(12):764-6.
PMID: 25670880
PMC: 4312370.
DOI: 10.6026/97320630010764.
Explorative search of distributed bio-data to answer complex biomedical questions.
Masseroli M, Picozzi M, Ghisalberti G, Ceri S
BMC Bioinformatics. 2014; 15 Suppl 1:S3.
PMID: 24564278
PMC: 4015759.
DOI: 10.1186/1471-2105-15-S1-S3.
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
Steinbach D, Alaux M, Amselem J, Choisne N, Durand S, Flores R
Database (Oxford). 2013; 2013:bat058.
PMID: 23959375
PMC: 3746681.
DOI: 10.1093/database/bat058.
In silico expressed sequence tag analysis in identification of probable diabetic genes as virtual therapeutic targets.
Behera P, Behera D, Panda A, Dixit A, Padhi P
Biomed Res Int. 2013; 2013:704818.
PMID: 23509765
PMC: 3582052.
DOI: 10.1155/2013/704818.
Teaching the fundamentals of biological data integration using classroom games.
Schneider M, Jimenez R
PLoS Comput Biol. 2013; 8(12):e1002789.
PMID: 23300402
PMC: 3531283.
DOI: 10.1371/journal.pcbi.1002789.
Biological databases for behavioral neurobiology.
Baker E
Int Rev Neurobiol. 2012; 103:19-38.
PMID: 23195119
PMC: 4222244.
DOI: 10.1016/B978-0-12-388408-4.00002-2.
IPD--the Immuno Polymorphism Database.
Robinson J, Halliwell J, McWilliam H, Lopez R, Marsh S
Nucleic Acids Res. 2012; 41(Database issue):D1234-40.
PMID: 23180793
PMC: 3531162.
DOI: 10.1093/nar/gks1140.
Seqcrawler: biological data indexing and browsing platform.
Sallou O, Bretaudeau A, Roult A
BMC Bioinformatics. 2012; 13:175.
PMID: 22827839
PMC: 3481441.
DOI: 10.1186/1471-2105-13-175.
Knowledge management for systems biology a general and visually driven framework applied to translational medicine.
Maier D, Kalus W, Wolff M, Kalko S, Roca J, Marin de Mas I
BMC Syst Biol. 2011; 5:38.
PMID: 21375767
PMC: 3060864.
DOI: 10.1186/1752-0509-5-38.
OrthoInspector: comprehensive orthology analysis and visual exploration.
Linard B, Thompson J, Poch O, Lecompte O
BMC Bioinformatics. 2011; 12:11.
PMID: 21219603
PMC: 3024942.
DOI: 10.1186/1471-2105-12-11.
HSPVdb--the Human Short Peptide Variation Database for improved mass spectrometry-based detection of polymorphic HLA-ligands.
Nijveen H, Kester M, Hassan C, Viars A, de Ru A, de Jager M
Immunogenetics. 2010; 63(3):143-53.
PMID: 21125265
PMC: 3035791.
DOI: 10.1007/s00251-010-0497-1.
A series of PDB related databases for everyday needs.
Joosten R, Te Beek T, Krieger E, Hekkelman M, Hooft R, Schneider R
Nucleic Acids Res. 2010; 39(Database issue):D411-9.
PMID: 21071423
PMC: 3013697.
DOI: 10.1093/nar/gkq1105.
The IMGT/HLA database.
Robinson J, Mistry K, McWilliam H, Lopez R, Parham P, Marsh S
Nucleic Acids Res. 2010; 39(Database issue):D1171-6.
PMID: 21071412
PMC: 3013815.
DOI: 10.1093/nar/gkq998.