Xia X
Viruses. 2021; 13(1).
PMID: 33466921
PMC: 7829931.
DOI: 10.3390/v13010109.
Chen L, Anantharaman K, Shaiber A, Eren A, Banfield J
Genome Res. 2020; 30(3):315-333.
PMID: 32188701
PMC: 7111523.
DOI: 10.1101/gr.258640.119.
Deb B, Uddin A, Chakraborty S
Arch Virol. 2020; 165(3):557-570.
PMID: 32036428
PMC: 7086886.
DOI: 10.1007/s00705-020-04533-6.
Cambridge J, Blinkova A, Salvador Rocha E, Bode Hernandez A, Moreno M, Gines-Candelaria E
PLoS One. 2018; 13(1):e0189673.
PMID: 29293521
PMC: 5749712.
DOI: 10.1371/journal.pone.0189673.
Comandatore F, Cordaux R, Bandi C, Blaxter M, Darby A, Makepeace B
Open Biol. 2015; 5(12):150099.
PMID: 26631376
PMC: 4703054.
DOI: 10.1098/rsob.150099.
Sequence analysis of origins of replication in the Saccharomyces cerevisiae genomes.
Li W, Zhong Z, Zhu P, Deng E, Ding H, Chen W
Front Microbiol. 2014; 5:574.
PMID: 25477864
PMC: 4235382.
DOI: 10.3389/fmicb.2014.00574.
Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control.
Evertts A, Coller H
Genes Cancer. 2013; 3(11-12):678-96.
PMID: 23634256
PMC: 3636748.
DOI: 10.1177/1947601912474891.
DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution.
Xia X
Mol Biol Evol. 2013; 30(7):1720-8.
PMID: 23564938
PMC: 3684854.
DOI: 10.1093/molbev/mst064.
Asymmetry indices for analysis and prediction of replication origins in eukaryotic genomes.
Marsolier-Kergoat M
PLoS One. 2012; 7(9):e45050.
PMID: 23028755
PMC: 3459929.
DOI: 10.1371/journal.pone.0045050.
Linking the DNA strand asymmetry to the spatio-temporal replication program. I. About the role of the replication fork polarity in genome evolution.
Baker A, Julienne H, Chen C, Audit B, dAubenton-Carafa Y, Thermes C
Eur Phys J E Soft Matter. 2012; 35(9):92.
PMID: 23001787
DOI: 10.1140/epje/i2012-12092-y.
Incidence of genome structure, DNA asymmetry, and cell physiology on T-DNA integration in chromosomes of the phytopathogenic fungus Leptosphaeria maculans.
Bourras S, Meyer M, Grandaubert J, Lapalu N, Fudal I, Linglin J
G3 (Bethesda). 2012; 2(8):891-904.
PMID: 22908038
PMC: 3411245.
DOI: 10.1534/g3.112.002048.
Current view on phytoplasma genomes and encoded metabolism.
Kube M, Mitrovic J, Duduk B, Rabus R, Seemuller E
ScientificWorldJournal. 2012; 2012:185942.
PMID: 22550465
PMC: 3322544.
DOI: 10.1100/2012/185942.
Validation of bacterial replication termination models using simulation of genomic mutations.
Kono N, Arakawa K, Tomita M
PLoS One. 2012; 7(4):e34526.
PMID: 22509315
PMC: 3317982.
DOI: 10.1371/journal.pone.0034526.
Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence.
Santos A, Guimaraes A, do Nascimento N, SanMiguel P, Martin S, Messick J
Vet Res. 2011; 42:102.
PMID: 21936946
PMC: 3196708.
DOI: 10.1186/1297-9716-42-102.
Codon usages of genes on chromosome, and surprisingly, genes in plasmid are primarily affected by strand-specific mutational biases in Lawsonia intracellularis.
Guo F, Yuan J
DNA Res. 2009; 16(2):91-104.
PMID: 19221094
PMC: 2671203.
DOI: 10.1093/dnares/dsp001.
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum.
Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham J
PLoS One. 2009; 4(1):e4207.
PMID: 19148287
PMC: 2615216.
DOI: 10.1371/journal.pone.0004207.
Same-strand overlapping genes in bacteria: compositional determinants of phase bias.
Sabath N, Graur D, Landan G
Biol Direct. 2008; 3:36.
PMID: 18717987
PMC: 2542354.
DOI: 10.1186/1745-6150-3-36.
An easier method for locating replication origins based on real-time polymerase chain reaction.
Mei Y, Chen D, Sun D, Yang Y, Huang Y, Shen P
Curr Microbiol. 2008; 56(6):633-8.
PMID: 18347853
DOI: 10.1007/s00284-008-9138-4.
Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes.
Morton R, Morton B
BMC Genomics. 2007; 8:369.
PMID: 17935620
PMC: 2099444.
DOI: 10.1186/1471-2164-8-369.
Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method.
Guo F, Yu X
BMC Genomics. 2007; 8:366.
PMID: 17925038
PMC: 2089121.
DOI: 10.1186/1471-2164-8-366.
