The PROSITE Database, Its Status in 1995

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 1996 Jan 1

PMID 8594577

Citations 72

Authors

A Bairoch

P Bucher

K Hofmann

Affiliations

Soon will be listed here.

Abstract

The PROSITE database consists of biologically significant patterns and profiles formulated in such a way that with appropriate computational tools it can help to determine to which known family of proteins (if any) a new sequence belongs or which known domain(s) it contains.

Citing Articles

Bioinformatics analysis of enzymes involved in cysteine biosynthesis: first evidence for the formation of cysteine synthase complex in cyanobacteria.

Kharwar S, Bhattacharjee S, Mishra A 3 Biotech. 2021; 11(7):354.

PMID: 34249595 PMC: 8222498. DOI: 10.1007/s13205-021-02899-1.

The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies.

Elmas A, Wang X, Dresch J PLoS One. 2017; 12(10):e0185570.

PMID: 28982128 PMC: 5628859. DOI: 10.1371/journal.pone.0185570.

A survey of computational intelligence techniques in protein function prediction.

Tiwari A, Srivastava R Int J Proteomics. 2015; 2014:845479.

PMID: 25574395 PMC: 4276698. DOI: 10.1155/2014/845479.

A comparative analysis of three classes of bacterial non-specific Acid phosphatases and archaeal phosphoesterases: evolutionary perspective.

U Gandhi N, Chandra S Acta Inform Med. 2013; 20(3):167-73.

PMID: 23322973 PMC: 3508851. DOI: 10.5455/aim.2012.20.167-173.

Zebrafish usp39 mutation leads to rb1 mRNA splicing defect and pituitary lineage expansion.

Rios Y, Melmed S, Lin S, Liu N PLoS Genet. 2011; 7(1):e1001271.

PMID: 21249182 PMC: 3020934. DOI: 10.1371/journal.pgen.1001271.

References

Gribskov M, McLachlan A, Eisenberg D . Profile analysis: detection of distantly related proteins. Proc Natl Acad Sci U S A. 1987; 84(13):4355-8. PMC: 305087. DOI: 10.1073/pnas.84.13.4355. View

Stoehr P, Omond R . The EMBL Network File Server. Nucleic Acids Res. 1989; 17(16):6763-4. PMC: 318401. DOI: 10.1093/nar/17.16.6763. View

Gribskov M, Luthy R, Eisenberg D . Profile analysis. Methods Enzymol. 1990; 183:146-59. DOI: 10.1016/0076-6879(90)83011-w. View

Henikoff S, Henikoff J . Automated assembly of protein blocks for database searching. Nucleic Acids Res. 1991; 19(23):6565-72. PMC: 329220. DOI: 10.1093/nar/19.23.6565. View

Ogiwara A, Uchiyama I, Seto Y, Kanehisa M . Construction of a dictionary of sequence motifs that characterize groups of related proteins. Protein Eng. 1992; 5(6):479-88. PMC: 7528547. DOI: 10.1093/protein/5.6.479. View

Bairoch A . The PROSITE dictionary of sites and patterns in proteins, its current status. Nucleic Acids Res. 1993; 21(13):3097-103. PMC: 309737. DOI: 10.1093/nar/21.13.3097. View

Bairoch A, Bucher P . PROSITE: recent developments. Nucleic Acids Res. 1994; 22(17):3583-9. PMC: 308326. View

Luthy R, Xenarios I, Bucher P . Improving the sensitivity of the sequence profile method. Protein Sci. 1994; 3(1):139-46. PMC: 2142471. DOI: 10.1002/pro.5560030118. View

Thompson J, Higgins D, Gibson T . Improved sensitivity of profile searches through the use of sequence weights and gap excision. Comput Appl Biosci. 1994; 10(1):19-29. DOI: 10.1093/bioinformatics/10.1.19. View

10.

Appel R, Bairoch A, Hochstrasser D . A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem Sci. 1994; 19(6):258-60. DOI: 10.1016/0968-0004(94)90153-8. View

11.

Emmert D, Stoehr P, Stoesser G, Cameron G . The European Bioinformatics Institute (EBI) databases. Nucleic Acids Res. 1994; 22(17):3445-9. PMC: 308299. DOI: 10.1093/nar/22.17.3445. View

12.

Bairoch A, Boeckmann B . The SWISS-PROT protein sequence data bank: current status. Nucleic Acids Res. 1994; 22(17):3578-80. PMC: 308324. View

13.

Henikoff S . Sequence analysis by electronic mail server. Trends Biochem Sci. 1993; 18(7):267-8. DOI: 10.1016/0968-0004(93)90179-q. View