Krishnan A, Ali L, Prabhu S, Pillai V, Chameettachal A, Vivet-Boudou V
RNA. 2023; 30(1):68-88.
PMID: 37914398
PMC: 10726167.
DOI: 10.1261/rna.079840.123.
Lei X, Goncalves-Carneiro D, Zang T, Bieniasz P
Elife. 2023; 12.
PMID: 36688533
PMC: 9908077.
DOI: 10.7554/eLife.83548.
Pillai V, Ali L, Prabhu S, Krishnan A, Tariq S, Mustafa F
Heliyon. 2023; 9(1):e12892.
PMID: 36685375
PMC: 9853374.
DOI: 10.1016/j.heliyon.2023.e12892.
Delli Ponti R, Mutwil M
BMC Genomics. 2021; 22(1):352.
PMID: 34000991
PMC: 8127238.
DOI: 10.1186/s12864-021-07638-7.
Ali L, Pitchai F, Vivet-Boudou V, Chameettachal A, Jabeen A, Pillai V
Front Microbiol. 2020; 11:595410.
PMID: 33250884
PMC: 7674771.
DOI: 10.3389/fmicb.2020.595410.
NMR Studies of Retroviral Genome Packaging.
Boyd P, Brown J, Brown J, Catazaro J, Chaudry I, Ding P
Viruses. 2020; 12(10).
PMID: 33008123
PMC: 7599994.
DOI: 10.3390/v12101115.
Gene Therapy Applications of Non-Human Lentiviral Vectors.
Munis A
Viruses. 2020; 12(10).
PMID: 33003635
PMC: 7599719.
DOI: 10.3390/v12101106.
Stabilizing role of structural elements within the 5´ Untranslated Region (UTR) and gag sequences in Mason-Pfizer monkey virus (MPMV) genomic RNA packaging.
Kalloush R, Vivet-Boudou V, Ali L, Pillai V, Mustafa F, Marquet R
RNA Biol. 2019; 16(5):612-625.
PMID: 30773097
PMC: 6546405.
DOI: 10.1080/15476286.2019.1572424.
A Method for RNA Structure Prediction Shows Evidence for Structure in lncRNAs.
Delli Ponti R, Armaos A, Marti S, Tartaglia G
Front Mol Biosci. 2018; 5:111.
PMID: 30560136
PMC: 6286970.
DOI: 10.3389/fmolb.2018.00111.
A cis-Acting Element Downstream of the Mouse Mammary Tumor Virus Major Splice Donor Critical for RNA Elongation and Stability.
Akhlaq S, Panicker N, Philip P, Ali L, Dudley J, Rizvi T
J Mol Biol. 2018; 430(21):4307-4324.
PMID: 30179605
PMC: 6193448.
DOI: 10.1016/j.jmb.2018.08.025.
The bifurcated stem loop 4 (SL4) is crucial for efficient packaging of mouse mammary tumor virus (MMTV) genomic RNA.
Mustafa F, Vivet-Boudou V, Jabeen A, Ali L, Kalloush R, Marquet R
RNA Biol. 2018; 15(8):1047-1059.
PMID: 29929424
PMC: 6161677.
DOI: 10.1080/15476286.2018.1486661.
Prospects for Foamy Viral Vector Anti-HIV Gene Therapy.
Nalla A, Trobridge G
Biomedicines. 2017; 4(2).
PMID: 28536375
PMC: 5344253.
DOI: 10.3390/biomedicines4020008.
Mechanistic differences between HIV-1 and SIV nucleocapsid proteins and cross-species HIV-1 genomic RNA recognition.
Post K, Olson E, Naufer M, Gorelick R, Rouzina I, Williams M
Retrovirology. 2016; 13(1):89.
PMID: 28034301
PMC: 5198506.
DOI: 10.1186/s12977-016-0322-5.
Cross- and Co-Packaging of Retroviral RNAs and Their Consequences.
Ali L, Rizvi T, Mustafa F
Viruses. 2016; 8(10).
PMID: 27727192
PMC: 5086612.
DOI: 10.3390/v8100276.
In Vivo Analysis of Infectivity, Fusogenicity, and Incorporation of a Mutagenic Viral Glycoprotein Library Reveals Determinants for Virus Incorporation.
Salamango D, Alam K, Burke D, Johnson M
J Virol. 2016; 90(14):6502-14.
PMID: 27147747
PMC: 4936155.
DOI: 10.1128/JVI.00804-16.
Rev-RRE Functional Activity Differs Substantially Among Primary HIV-1 Isolates.
Jackson P, Tebit D, Rekosh D, Hammarskjold M
AIDS Res Hum Retroviruses. 2016; 32(9):923-34.
PMID: 27147495
PMC: 5028908.
DOI: 10.1089/AID.2016.0047.
Packaging of Mason-Pfizer monkey virus (MPMV) genomic RNA depends upon conserved long-range interactions (LRIs) between U5 and gag sequences.
Kalloush R, Vivet-Boudou V, Ali L, Mustafa F, Marquet R, Rizvi T
RNA. 2016; 22(6):905-19.
PMID: 27095024
PMC: 4878616.
DOI: 10.1261/rna.055731.115.
The HIV-1 Rev response element (RRE) adopts alternative conformations that promote different rates of virus replication.
Sherpa C, Rausch J, Le Grice S, Hammarskjold M, Rekosh D
Nucleic Acids Res. 2015; 43(9):4676-86.
PMID: 25855816
PMC: 4482075.
DOI: 10.1093/nar/gkv313.
Structural basis of genomic RNA (gRNA) dimerization and packaging determinants of mouse mammary tumor virus (MMTV).
Aktar S, Vivet-Boudou V, Ali L, Jabeen A, Kalloush R, Richer D
Retrovirology. 2014; 11:96.
PMID: 25394412
PMC: 4264320.
DOI: 10.1186/s12977-014-0096-6.
Variation of human immunodeficiency virus type-1 reverse transcriptase within the simian immunodeficiency virus genome of RT-SHIV.
Wadford D, Kauffman R, Deere J, Aoki S, Stanton R, Higgins J
PLoS One. 2014; 9(1):e86997.
PMID: 24498008
PMC: 3909041.
DOI: 10.1371/journal.pone.0086997.