Genetic Heterogeneity in Alzheimer's Disease: a Grade of Membership Analysis
Overview
Authors
Affiliations
Grade of membership analysis (GoM) may have particular relevance for genetic epidemiology. The method can flexibly relate genetic markers, clinical features, and environmental exposures to possible subtypes of disease termed pure types even when population allele frequencies and penetrance functions are not known. Hence, GoM may complement existing strategies that sometimes fail in the presence of heterogeneity or when case definition is not well established. To illustrate the method, individuals in the Seattle data set were evaluated with respect to affection status, age at onset, pedigree, sex, and genetic markers on chromosomes 19 and 21. Seven pure types were found which we have designated as: Early Onset, Late Onset, Probable, and Unaffected 1 to Unaffected 4.
Accurate phenotyping: Reconciling approaches through Bayesian model averaging.
Chia-Ming Chen C, Keith J, Mengersen K PLoS One. 2017; 12(4):e0176136.
PMID: 28423058 PMC: 5396931. DOI: 10.1371/journal.pone.0176136.
Optimal Trend Tests for Genetic Association Studies of Heterogeneous Diseases.
Lee W Sci Rep. 2016; 6:27821.
PMID: 27278756 PMC: 4899796. DOI: 10.1038/srep27821.
DESCRIBING DISABILITY THROUGH INDIVIDUAL-LEVEL MIXTURE MODELS FOR MULTIVARIATE BINARY DATA.
Erosheva E, Fienberg S, Joutard C Ann Appl Stat. 2011; 1(2):346-384.
PMID: 21687832 PMC: 3115782. DOI: 10.1214/07-aoas126.
Structural differences between apolipoprotein E3 and E4 as measured by (19)F NMR.
Garai K, Mustafi S, Baban B, Frieden C Protein Sci. 2009; 19(1):66-74.
PMID: 19904741 PMC: 2817840. DOI: 10.1002/pro.283.
Parkinson's disease and low frequency alleles found together throughout LRRK2.
Paisan-Ruiz C, Washecka N, Nath P, Singleton A, Corder E Ann Hum Genet. 2009; 73(Pt 4):391-403.
PMID: 19489756 PMC: 5217459. DOI: 10.1111/j.1469-1809.2009.00524.x.