Targeted Inactivation of the Major Positive Regulatory Element (HS-40) of the Human Alpha-globin Gene Locus
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We have examined the role of the major positive upstream regulatory element of the human alpha-globin gene locus (HS-40) in its natural chromosomal context. Using homologous recombination, HS-40 was replaced by a neo marker gene in a mouse erythroleukemia hybrid cell line containing a single copy of human chromosome 16. In clones from which HS-40 had been deleted, human alpha-globin gene expression was severely reduced, although basal levels of alpha 1 and alpha 2-globin mRNA expression representing less than 3% of the level in control cell lines were detected. Deletion of the neo marker gene, by using FLP recombinase/FLP recombinase target system, proved that the phenotype observed was not caused by the regulatory elements of this marker gene. In the targeted clones, deletion of HS-40 apparently does not affect long-range or local chromatin structure at the alpha promoters. Therefore, these results indicate that, in the experimental system used, HS-40 behaves as a strong inducible enhancer of human alpha-globin gene expression.
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Nabavi Nouri M, Alandijani L, van Engelen K, Tole S, Lalonde E, Balci T Genes (Basel). 2024; 15(7).
PMID: 39062615 PMC: 11275569. DOI: 10.3390/genes15070836.
Pena R, Lopes P, Gaspar G, Miranda A, Faustino P Mol Biol Rep. 2024; 51(1):612.
PMID: 38704770 PMC: 11070386. DOI: 10.1007/s11033-024-09530-5.
Li Z, Shang X, Luo S, Zhu F, Wei X, Zhou W Mol Genet Genomics. 2020; 295(2):505-514.
PMID: 31897801 DOI: 10.1007/s00438-019-01637-w.
Multiplexed analysis of chromosome conformation at vastly improved sensitivity.
Davies J, Telenius J, McGowan S, Roberts N, Taylor S, Higgs D Nat Methods. 2015; 13(1):74-80.
PMID: 26595209 PMC: 4724891. DOI: 10.1038/nmeth.3664.
Uncovering enhancer functions using the α-globin locus.
Vernimmen D PLoS Genet. 2014; 10(10):e1004668.
PMID: 25330308 PMC: 4199490. DOI: 10.1371/journal.pgen.1004668.