» Articles » PMID: 7505428

NMR Evidence for the RNA Stem-loop Structure Involved in the Transcription Attenuation of E. Coli Trp Operon

Overview
Specialty Biochemistry
Date 1993 Nov 25
PMID 7505428
Citations 3
Authors
Affiliations
Soon will be listed here.
Abstract

High field 1H-NMR studies of a synthetic 21-mer RNA fragment, corresponding to residues +114 to +134 within the trp leader mRNA transcript, have been carried out. Seven well resolved imino proton resonances corresponding to six C-G and one A-U hydrogen bonded base pairs, together with their characteristic NOE patterns can be identified in the NMR spectrum. This experimental result provides direct evidence for the postulated stem-loop secondary structure, 3:4, which has been reported to act as a transcription termination signal for RNA polymerase.

Citing Articles

Molecular Beacon for Detection miRNA-21 as a Biomarker of Lung Cancer.

Alexandre D, Teixeira B, Rico A, Valente S, Craveiro A, Baptista P Int J Mol Sci. 2022; 23(6).

PMID: 35328750 PMC: 8955680. DOI: 10.3390/ijms23063330.


1H-NMR characterization of L-tryptophan binding to TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis.

Ramesh V, Brown T Biochem J. 1996; 315 ( Pt 3):895-900.

PMID: 8645174 PMC: 1217291. DOI: 10.1042/bj3150895.


The use of non-uniform deuterium labelling ['NMR-window'] to study the NMR structure of a 21mer RNA hairpin.

Foldesi A, Yamakage S, Nilsson F, Maltseva T, Chattopadhyaya J Nucleic Acids Res. 1996; 24(7):1187-94.

PMID: 8614618 PMC: 145781. DOI: 10.1093/nar/24.7.1187.

References
1.
Lee F, Yanofsky C . Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination. Proc Natl Acad Sci U S A. 1977; 74(10):4365-9. PMC: 431942. DOI: 10.1073/pnas.74.10.4365. View

2.
OXENDER D, Zurawski G, Yanofsky C . Attenuation in the Escherichia coli tryptophan operon: role of RNA secondary structure involving the tryptophan codon region. Proc Natl Acad Sci U S A. 1979; 76(11):5524-8. PMC: 411681. DOI: 10.1073/pnas.76.11.5524. View

3.
Yanofsky C . Attenuation in the control of expression of bacterial operons. Nature. 1981; 289(5800):751-8. DOI: 10.1038/289751a0. View

4.
Reid B . NMR studies on RNA structure and dynamics. Annu Rev Biochem. 1981; 50:969-96. DOI: 10.1146/annurev.bi.50.070181.004541. View

5.
Williamson M, Marion D, Wuthrich K . Secondary structure in the solution conformation of the proteinase inhibitor IIA from bull seminal plasma by nuclear magnetic resonance. J Mol Biol. 1984; 173(3):341-59. DOI: 10.1016/0022-2836(84)90125-6. View