The REH Theory of Protein and Nucleic Acid Divergence: a Retrospective Update

Overview

Journal J Mol Evol

Specialty Biochemistry

Date 1978 Oct 6

PMID 722809

Citations 11

Authors

R Holmquist

Affiliations

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Citing Articles

Evolutionary analysis of alpha and beta hemoglobin genes by REH theory under the assumption of the equiprobability of genetic events.

Holmquist R J Mol Evol. 1980; 15(2):149-59.

PMID: 7401175 DOI: 10.1007/BF01732667.

The old REH theory remains unsatisfactory and the new REH theory is problematical - a reply to Holmquist and Jukes.

FITCH W J Mol Evol. 1981; 18(1):60-7.

PMID: 7334529 DOI: 10.1007/BF01733212.

The current status of REH theory.

Holmquist R, Jukes T J Mol Evol. 1981; 18(1):47-59.

PMID: 7334528 DOI: 10.1007/BF01733211.

Simulation of protein evolution by random fixation of allowed codons.

Coates M, Stone S J Mol Evol. 1981; 17(6):311-28.

PMID: 7288888 DOI: 10.1007/BF01734353.

The estimation of genetic divergence.

Holmquist R, Conroy T J Mol Evol. 1981; 17(3):167-81.

PMID: 7265267 DOI: 10.1007/BF01733911.

References

Holmquist R, Jukes T . Sequence data: magnitude and implications of some ambiguities. J Mol Evol. 1972; 2(1):10-6. DOI: 10.1007/BF01653938. View

Moore G, Goodman M, Callahan C, Holmquist R, Moise H . Stochastic versus augmented maximum parsimony method for estimating superimposed mutations in the divergent evolution of protein sequences. Methods tested on cytochrome c amino acid sequences. J Mol Biol. 1976; 105(1):15-37. DOI: 10.1016/0022-2836(76)90193-5. View

Holmquist R . Empirical support for a stochastic model of evolution. J Mol Evol. 1972; 1(3):211-22. DOI: 10.1007/BF01660240. View

Moore G . Proof of the populous path algorithm for missing mutations in parsimony trees. J Theor Biol. 1977; 66(1):95-106. DOI: 10.1016/0022-5193(77)90314-9. View

Goodman M, PECHERE J . The evolution of muscular parvalbumins investigated by the maximum parsimony method. J Mol Evol. 1977; 9(2):131-58. DOI: 10.1007/BF01732745. View

Nei M, Chakraborty R . Empirical relationship between the number of nucleotide substitutions and interspecific identity of amino acid sequences in some proteins. J Mol Evol. 1976; 7(4):313-23. DOI: 10.1007/BF01743627. View

FITCH W . Is the fixation of observable mutations distributed randomly among the three nucleotide positions of the codon?. J Mol Evol. 1973; 2(2-3):123-36. DOI: 10.1007/BF01653992. View

Holmquist R . The stochastic model and deviations from randomness in eukaryotic tRNAs: comparison with the PAM approach. J Mol Evol. 1973; 2(2-3):145-8. DOI: 10.1007/BF01653994. View

Goodman M, Moore G, BARNABAS J, Matsuda G . The phylogeny of human globin genes investigated by the maximum parsimony method. J Mol Evol. 1974; 3(1):1-48. DOI: 10.1007/BF01795974. View

10.

Jukes T, Holmquist R . Estimation of evolutionary changes in certain homologous polypeptide chains. J Mol Biol. 1972; 64(1):163-79. DOI: 10.1016/0022-2836(72)90327-0. View

11.

FITCH W . Aspects of molecular evolution. Annu Rev Genet. 1973; 7:343-80. DOI: 10.1146/annurev.ge.07.120173.002015. View

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Tateno Y, Nei M . Goodman et al.'s method for augmenting the number of nucleotide substitutions. J Mol Evol. 1978; 11(1):67-73. DOI: 10.1007/BF01768026. View

13.

Holmquist R, Cantor C, Jukes T . Improved procedures for comparing homologous sequences in molecules of proteins and nucleic acids. J Mol Biol. 1972; 64(1):145-61. DOI: 10.1016/0022-2836(72)90326-9. View

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Salser W, Bowen S, Browne D, Fedoroff N, Fry K, Heindell H . Investigation of the organization of mammalian chromosomes at the DNA sequence level. Fed Proc. 1976; 35(1):23-35. View

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Kimura M, Ota T . On the stochastic model for estimation of mutational distance between homologous proteins. J Mol Evol. 1972; 2(1):87-90. DOI: 10.1007/BF01653945. View

16.

Holmquist R, Jukes T, Moise H, Goodman M, Moore G . The evolution of the globin family genes: concordance of stochastic and augmented maximum parsimony genetic distances for alpha hemoglobin, beta hemoglobin and myoglobin phylogenies. J Mol Biol. 1976; 105(1):39-74. DOI: 10.1016/0022-2836(76)90194-7. View