Galindo-Murillo R, Cheatham T
Nucleic Acids Res. 2021; 49(7):3735-3747.
PMID: 33764383
PMC: 8053101.
DOI: 10.1093/nar/gkab143.
Dikic J, Seidel R
Biophys J. 2019; 116(8):1394-1405.
PMID: 30954211
PMC: 6486475.
DOI: 10.1016/j.bpj.2019.03.005.
Krueger E, Shim J, Fathizadeh A, Chang A, Subei B, Yocham K
ACS Nano. 2016; 10(9):8910-7.
PMID: 27559753
PMC: 5111899.
DOI: 10.1021/acsnano.6b04876.
Sobell H
J Struct Funct Genomics. 2016; 17(1):17-31.
PMID: 26984848
PMC: 4833827.
DOI: 10.1007/s10969-016-9202-4.
Maffeo C, Yoo J, Comer J, Wells D, Luan B, Aksimentiev A
J Phys Condens Matter. 2014; 26(41):413101.
PMID: 25238560
PMC: 4207370.
DOI: 10.1088/0953-8984/26/41/413101.
The DNA intercalators ethidium bromide and propidium iodide also bind to core histones.
Banerjee A, Majumder P, Sanyal S, Singh J, Jana K, Das C
FEBS Open Bio. 2014; 4:251-9.
PMID: 24649406
PMC: 3958746.
DOI: 10.1016/j.fob.2014.02.006.
Structural insights into the effects of 2'-5' linkages on the RNA duplex.
Sheng J, Li L, Engelhart A, Gan J, Wang J, Szostak J
Proc Natl Acad Sci U S A. 2014; 111(8):3050-5.
PMID: 24516151
PMC: 3939906.
DOI: 10.1073/pnas.1317799111.
Crystal structure of Δ-[Ru(bpy)₂dppz]²⁺ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation.
Song H, Kaiser J, Barton J
Nat Chem. 2012; 4(8):615-20.
PMID: 22824892
PMC: 3478149.
DOI: 10.1038/nchem.1375.
Characterization of PicoGreen interaction with dsDNA and the origin of its fluorescence enhancement upon binding.
Dragan A, Casas-Finet J, Bishop E, Strouse R, Schenerman M, Geddes C
Biophys J. 2010; 99(9):3010-9.
PMID: 21044599
PMC: 2965993.
DOI: 10.1016/j.bpj.2010.09.012.
DNA profiling using solid-state nanopores: detection of DNA-binding molecules.
Wanunu M, Sutin J, Meller A
Nano Lett. 2009; 9(10):3498-502.
PMID: 19585985
PMC: 2871189.
DOI: 10.1021/nl901691v.
DNA binding by Ru(II)-bis(bipyridine)-pteridinyl complexes.
Dalton S, Glazier S, Leung B, Win S, Megatulski C, Burgmayer S
J Biol Inorg Chem. 2008; 13(7):1133-48.
PMID: 18587602
DOI: 10.1007/s00775-008-0399-y.
Kinking the double helix by bending deformation.
Du Q, Kotlyar A, Vologodskii A
Nucleic Acids Res. 2007; 36(4):1120-8.
PMID: 18096619
PMC: 2275110.
DOI: 10.1093/nar/gkm1125.
The complex of ethidium bromide with genomic DNA: structure analysis by polarized Raman spectroscopy.
Tsuboi M, Benevides J, Thomas Jr G
Biophys J. 2006; 92(3):928-34.
PMID: 17098786
PMC: 1779987.
DOI: 10.1529/biophysj.106.093633.
Lipopolyamine-mediated single nanoparticle formation of calf thymus DNA analyzed by fluorescence correlation spectroscopy.
Adjimatera N, Kral T, Hof M, Blagbrough I
Pharm Res. 2006; 23(7):1564-73.
PMID: 16783476
DOI: 10.1007/s11095-006-0278-6.
Crystal structure of an RNA.DNA hybrid reveals intermolecular intercalation: dimer formation by base-pair swapping.
Han G, Kopka M, Langs D, Sawaya M, Dickerson R
Proc Natl Acad Sci U S A. 2003; 100(16):9214-9.
PMID: 12872000
PMC: 170898.
DOI: 10.1073/pnas.1533326100.
A comparison of the effects of DNA-damaging agents and biotic elicitors on the induction of plant defense genes, nuclear distortion, and cell death.
Choi J, Klosterman S, Hadwiger L
Plant Physiol. 2001; 125(2):752-62.
PMID: 11161032
PMC: 64876.
DOI: 10.1104/pp.125.2.752.
NMR determination of the conformational and drug binding properties of the DNA heptamer d(GpCpGpApApGpC) in aqueous solution.
Davies D, Pahomov V, Veselkov A
Nucleic Acids Res. 1998; 25(22):4523-31.
PMID: 9358161
PMC: 147085.
DOI: 10.1093/nar/25.22.4523.
Dynamical change of mitochondrial DNA induced in the living cell by perturbing the electrochemical gradient.
Coppey-Moisan M, Brunet A, Morais R, Coppey J
Biophys J. 1996; 71(5):2319-28.
PMID: 8913573
PMC: 1233722.
DOI: 10.1016/S0006-3495(96)79472-9.
Large-amplitude picosecond anisotropy decay of the intrinsic fluorescence of double-stranded DNA.
Georghiou S, Bradrick T, Philippetis A, Beechem J
Biophys J. 1996; 70(4):1909-22.
PMID: 8785350
PMC: 1225160.
DOI: 10.1016/S0006-3495(96)79755-2.
Stereochemical basis of DNA bending by transcription factors.
Suzuki M, Yagi N
Nucleic Acids Res. 1995; 23(12):2083-91.
PMID: 7610037
PMC: 306994.
DOI: 10.1093/nar/23.12.2083.