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Simplified Computer Programs for Search of Homology Within Nucleotide Sequences

Overview
Specialty Biochemistry
Date 1984 Jan 11
PMID 6546417
Citations 8
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Abstract

Four new computer programs for search of homology within nucleotide sequences are presented. The main scope of the program design is flexibility, independence of sequence length and the capability to be used by any molecular biologist without any prior computer experience. The programs offer a linear search, a search for maximal identity, an alignment along a given sequence and a search based on homology within the amino acid coding capacity of nucleotide sequences. The language is Fortran V. Copies are available on request.

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References
1.
Queen C, Wegman M, Korn L . Improvements to a program for DNA analysis: a procedure to find homologies among many sequences. Nucleic Acids Res. 1982; 10(1):449-56. PMC: 326145. DOI: 10.1093/nar/10.1.449. View

2.
Wilbur W, Lipman D . Rapid similarity searches of nucleic acid and protein data banks. Proc Natl Acad Sci U S A. 1983; 80(3):726-30. PMC: 393452. DOI: 10.1073/pnas.80.3.726. View

3.
Staden R . Sequence data handling by computer. Nucleic Acids Res. 1977; 4(11):4037-51. PMC: 343220. DOI: 10.1093/nar/4.11.4037. View

4.
Stockwell P . A large database DNA sequence handling program with generalized searching specifications. Nucleic Acids Res. 1982; 10(1):115-25. PMC: 326119. DOI: 10.1093/nar/10.1.115. View

5.
Novotny J . Matrix program to analyze primary structure homology. Nucleic Acids Res. 1982; 10(1):127-31. PMC: 326120. DOI: 10.1093/nar/10.1.127. View