The Organization of Oligonucleosomes in Yeast
Overview
Authors
Affiliations
We have developed a method of preparing yeast chromatin that facilitates the analysis of nucleoprotein organization. Yeast chromatin, isolated as an insoluble complex, is digested with micrococcal nuclease and fractionated into major insoluble and soluble fractions. No nucleosomal repeat is seen early in digestion for the insoluble fraction. Nucleosomal complexes of the soluble fraction are excised by nuclease in a distinctive non-random pattern; they are markedly depleted in mononucleosomes. When we analyze the soluble material by high resolution native electrophoresis, we find that the nucleoproteins resolve into two bands for each DNA multimer of the nucleosomal repeat. Our results suggest that there are structural similarities between bulk yeast chromatin and chromatin configurations found in transcribing genes of complex eukaryotes.
Uezu S, Yamamoto T, Oide M, Takayama Y, Okajima K, Kobayashi A Sci Rep. 2023; 13(1):10802.
PMID: 37407674 PMC: 10322978. DOI: 10.1038/s41598-023-37733-6.
Are extraordinary nucleosome structures more ordinary than we thought?.
Chong C, Gan L Chromosoma. 2023; 132(3):139-152.
PMID: 36917245 DOI: 10.1007/s00412-023-00791-w.
Fuse T, Katsumata K, Morohoshi K, Mukai Y, Ichikawa Y, Kurumizaka H PLoS One. 2017; 12(10):e0186974.
PMID: 29073207 PMC: 5658119. DOI: 10.1371/journal.pone.0186974.
An improved isolation procedure for yeast two-micrometer minichromosomes.
Shalitin C, Vishlizky A Curr Genet. 2013; 9(1):107-11.
PMID: 24173517 DOI: 10.1007/BF00396211.
Differential chromatin proteomics of the MMS-induced DNA damage response in yeast.
Kim D, Gidvani R, Ingalls B, Duncker B, McConkey B Proteome Sci. 2011; 9:62.
PMID: 21967861 PMC: 3212819. DOI: 10.1186/1477-5956-9-62.