» Articles » PMID: 6344013

The Organization of Oligonucleosomes in Yeast

Overview
Specialty Biochemistry
Date 1983 Jun 11
PMID 6344013
Citations 16
Authors
Affiliations
Soon will be listed here.
Abstract

We have developed a method of preparing yeast chromatin that facilitates the analysis of nucleoprotein organization. Yeast chromatin, isolated as an insoluble complex, is digested with micrococcal nuclease and fractionated into major insoluble and soluble fractions. No nucleosomal repeat is seen early in digestion for the insoluble fraction. Nucleosomal complexes of the soluble fraction are excised by nuclease in a distinctive non-random pattern; they are markedly depleted in mononucleosomes. When we analyze the soluble material by high resolution native electrophoresis, we find that the nucleoproteins resolve into two bands for each DNA multimer of the nucleosomal repeat. Our results suggest that there are structural similarities between bulk yeast chromatin and chromatin configurations found in transcribing genes of complex eukaryotes.

Citing Articles

Ultrastructure and fractal property of chromosomes in close-to-native yeast nuclei visualized using X-ray laser diffraction.

Uezu S, Yamamoto T, Oide M, Takayama Y, Okajima K, Kobayashi A Sci Rep. 2023; 13(1):10802.

PMID: 37407674 PMC: 10322978. DOI: 10.1038/s41598-023-37733-6.


Are extraordinary nucleosome structures more ordinary than we thought?.

Chong C, Gan L Chromosoma. 2023; 132(3):139-152.

PMID: 36917245 DOI: 10.1007/s00412-023-00791-w.


Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo.

Fuse T, Katsumata K, Morohoshi K, Mukai Y, Ichikawa Y, Kurumizaka H PLoS One. 2017; 12(10):e0186974.

PMID: 29073207 PMC: 5658119. DOI: 10.1371/journal.pone.0186974.


An improved isolation procedure for yeast two-micrometer minichromosomes.

Shalitin C, Vishlizky A Curr Genet. 2013; 9(1):107-11.

PMID: 24173517 DOI: 10.1007/BF00396211.


Differential chromatin proteomics of the MMS-induced DNA damage response in yeast.

Kim D, Gidvani R, Ingalls B, Duncker B, McConkey B Proteome Sci. 2011; 9:62.

PMID: 21967861 PMC: 3212819. DOI: 10.1186/1477-5956-9-62.


References
1.
Basu S . Superstructures of wet inactive chromatin and the chromosome surface. J Supramol Struct. 1979; 10(4):377-95. DOI: 10.1002/jss.400100402. View

2.
Lohr D, VAN Holde K . Organization of spacer DNA in chromatin. Proc Natl Acad Sci U S A. 1979; 76(12):6326-30. PMC: 411857. DOI: 10.1073/pnas.76.12.6326. View

3.
Scott J, Schekman R . Lyticase: endoglucanase and protease activities that act together in yeast cell lysis. J Bacteriol. 1980; 142(2):414-23. PMC: 293993. DOI: 10.1128/jb.142.2.414-423.1980. View

4.
Labarca C, Paigen K . A simple, rapid, and sensitive DNA assay procedure. Anal Biochem. 1980; 102(2):344-52. DOI: 10.1016/0003-2697(80)90165-7. View

5.
McGhee J, Rau D, Charney E, Felsenfeld G . Orientation of the nucleosome within the higher order structure of chromatin. Cell. 1980; 22(1 Pt 1):87-96. DOI: 10.1016/0092-8674(80)90157-9. View