Shey R, Nchanji G, Stong T, Yaah N, Shintouo C, Yengo B
Int J Mol Sci. 2025; 26(4).
PMID: 40004053
PMC: 11855821.
DOI: 10.3390/ijms26041587.
Razali R, Fahrudin F, Subbiah V, Takano K, Budiman C
Molecules. 2022; 27(18).
PMID: 36144767
PMC: 9502857.
DOI: 10.3390/molecules27186031.
He Z, Qin L, Xu X, Ding S
Comput Struct Biotechnol J. 2022; 20:2600-2610.
PMID: 35685354
PMC: 9160401.
DOI: 10.1016/j.csbj.2022.05.021.
Gaunt E, Digard P
Wiley Interdiscip Rev RNA. 2021; 13(2):e1679.
PMID: 34155814
PMC: 8420353.
DOI: 10.1002/wrna.1679.
Gonzalez de Pradena A, Sanchez Jimenez A, Leon D, Simmonds P, Garcia J, Valli A
mBio. 2020; 11(1).
PMID: 32071264
PMC: 7029135.
DOI: 10.1128/mBio.02818-19.
NullSeq: A Tool for Generating Random Coding Sequences with Desired Amino Acid and GC Contents.
Liu S, Hockenberry A, Lancichinetti A, Jewett M, Amaral L
PLoS Comput Biol. 2016; 12(11):e1005184.
PMID: 27835644
PMC: 5106001.
DOI: 10.1371/journal.pcbi.1005184.
Sequences encoding identical peptides for the analysis and manipulation of coding DNA.
Sanchez J
Bioinformation. 2013; 9(10):511-7.
PMID: 23861567
PMC: 3705626.
DOI: 10.6026/97320630009511.
Wobble base-pairing slows in vivo translation elongation in metazoans.
Stadler M, Fire A
RNA. 2011; 17(12):2063-73.
PMID: 22045228
PMC: 3222120.
DOI: 10.1261/rna.02890211.
Regulating highly dynamic unstructured proteins and their coding mRNAs.
Ma B, Nussinov R
Genome Biol. 2009; 10(1):204.
PMID: 19226433
PMC: 2687783.
DOI: 10.1186/gb-2009-10-1-204.
Highly conserved regimes of neighbor-base-dependent mutation generated the background primary-structural heterogeneities along vertebrate chromosomes.
Antezana M, Jordan I
PLoS One. 2008; 3(5):e2145.
PMID: 18478116
PMC: 2366069.
DOI: 10.1371/journal.pone.0002145.
"Word" preference in the genomic text and genome evolution: different modes of n-tuplet usage in coding and noncoding sequences.
Nikolaou C, Almirantis Y
J Mol Evol. 2005; 61(1):23-35.
PMID: 16059753
DOI: 10.1007/s00239-004-0209-2.
Measuring the coding potential of genomic sequences through a combination of triplet occurrence patterns and RNY preference.
Nikolaou C, Almirantis Y
J Mol Evol. 2004; 59(3):309-16.
PMID: 15553086
DOI: 10.1007/s00239-004-2626-7.
Mammalian mutation pressure, synonymous codon choice, and mRNA degradation.
Duan J, Antezana M
J Mol Evol. 2004; 57(6):694-701.
PMID: 14745538
DOI: 10.1007/s00239-003-2519-1.
Characteristic enrichment of DNA repeats in different genomes.
Cox R, Mirkin S
Proc Natl Acad Sci U S A. 1997; 94(10):5237-42.
PMID: 9144221
PMC: 24662.
DOI: 10.1073/pnas.94.10.5237.
Dinucleotides and G+C content in human genes: opposite behavior of GpG, GpC, and TpC at II-III codon positions and in introns.
Gutierrez G, Oliver J, Marin A
J Mol Evol. 1993; 37(2):131-6.
PMID: 8411202
DOI: 10.1007/BF02407348.
Tandemly repeated pentanucleotides in DNA sequences of eucaryotes.
Borstnik B, Pumpernik D, Lukman D, Ugarkovic D, Plohl M
Nucleic Acids Res. 1994; 22(16):3412-7.
PMID: 8078778
PMC: 523737.
DOI: 10.1093/nar/22.16.3412.
Disease severity correlates with position of keratin point mutations in patients with epidermolysis bullosa simplex.
Letai A, Coulombe P, McCormick M, Yu Q, Hutton E, Fuchs E
Proc Natl Acad Sci U S A. 1993; 90(8):3197-201.
PMID: 7682695
PMC: 46266.
DOI: 10.1073/pnas.90.8.3197.
Relative roles of primary sequence and (G + C)% in determining the hierarchy of frequencies of complementary trinucleotide pairs in DNAs of different species.
Forsdyke D
J Mol Evol. 1995; 41(5):573-81.
PMID: 7490771
DOI: 10.1007/BF00175815.
Doublet frequencies in evolutionary distinct groups.
Nussinov R
Nucleic Acids Res. 1984; 12(3):1749-63.
PMID: 6583663
PMC: 318613.
DOI: 10.1093/nar/12.3.1749.
Strong doublet preferences in nucleotide sequences and DNA geometry.
Nussinov R
J Mol Evol. 1984; 20(2):111-9.
PMID: 6433029
DOI: 10.1007/BF02257371.
