Kolbeck P, Tisma M, Analikwu B, Vanderlinden W, Dekker C, Lipfert J
Nucleic Acids Res. 2023; 52(1):59-72.
PMID: 38000393
PMC: 10783501.
DOI: 10.1093/nar/gkad1055.
Tian F, Zhang C, Zhou E, Dong H, Tan Z, Zhang X
Proc Natl Acad Sci U S A. 2023; 120(20):e2218425120.
PMID: 37155848
PMC: 10193934.
DOI: 10.1073/pnas.2218425120.
Cruz-Leon S, Schwierz N
J Phys Chem B. 2022; 126(43):8646-8654.
PMID: 36260822
PMC: 9639116.
DOI: 10.1021/acs.jpcb.2c04488.
Bera S, America P, Maatsola S, Seifert M, Ostrofet E, Cnossen J
Nucleic Acids Res. 2022; 50(13):7511-7528.
PMID: 35819191
PMC: 9303404.
DOI: 10.1093/nar/gkac560.
Cruz-Leon S, Vanderlinden W, Muller P, Forster T, Staudt G, Lin Y
Nucleic Acids Res. 2022; 50(10):5726-5738.
PMID: 35640616
PMC: 9177979.
DOI: 10.1093/nar/gkac445.
Twist-diameter coupling drives DNA twist changes with salt and temperature.
Zhang C, Tian F, Lu Y, Yuan B, Tan Z, Zhang X
Sci Adv. 2022; 8(12):eabn1384.
PMID: 35319990
PMC: 8942373.
DOI: 10.1126/sciadv.abn1384.
Composition of Transcription Machinery and Its Crosstalk with Nucleoid-Associated Proteins and Global Transcription Factors.
Muskhelishvili G, Sobetzko P, Mehandziska S, Travers A
Biomolecules. 2021; 11(7).
PMID: 34206477
PMC: 8301835.
DOI: 10.3390/biom11070924.
Chromosomal Organization and Regulation of Genetic Function in Integrates the DNA Analog and Digital Information.
Travers A, Muskhelishvili G
EcoSal Plus. 2020; 9(1).
PMID: 32056535
PMC: 11168577.
DOI: 10.1128/ecosalplus.ESP-0016-2019.
Modelling and DNA topology of compact 2-start and 1-start chromatin fibres.
Wu C, Travers A
Nucleic Acids Res. 2019; 47(18):9902-9924.
PMID: 31219588
PMC: 6765122.
DOI: 10.1093/nar/gkz495.
What controls DNA looping?.
Perez P, Clauvelin N, Grosner M, Colasanti A, Olson W
Int J Mol Sci. 2014; 15(9):15090-108.
PMID: 25167135
PMC: 4200792.
DOI: 10.3390/ijms150915090.
K(+) , Na(+) , and Mg(2+) on DNA translocation in silicon nitride nanopores.
Uplinger J, Thomas B, Rollings R, Fologea D, McNabb D, Li J
Electrophoresis. 2012; 33(23):3448-57.
PMID: 23147752
PMC: 3514626.
DOI: 10.1002/elps.201200165.
Bullied no more: when and how DNA shoves proteins around.
Fogg J, Randall G, Pettitt B, Sumners D, Harris S, Zechiedrich L
Q Rev Biophys. 2012; 45(3):257-299.
PMID: 22850561
PMC: 4866820.
DOI: 10.1017/S0033583512000054.
Cooperative kinking at distant sites in mechanically stressed DNA.
Lionberger T, Demurtas D, Witz G, Dorier J, Lillian T, Meyhofer E
Nucleic Acids Res. 2011; 39(22):9820-32.
PMID: 21917856
PMC: 3239204.
DOI: 10.1093/nar/gkr666.
The torsional state of DNA within the chromosome.
Roca J
Chromosoma. 2011; 120(4):323-34.
PMID: 21567156
DOI: 10.1007/s00412-011-0324-y.
Internal dynamics of supercoiled DNA molecules.
Kalkbrenner T, Arnold A, Tans S
Biophys J. 2009; 96(12):4951-5.
PMID: 19527654
PMC: 2712042.
DOI: 10.1016/j.bpj.2009.03.056.
Effect of the matrix on DNA electrophoretic mobility.
Stellwagen N, Stellwagen E
J Chromatogr A. 2008; 1216(10):1917-29.
PMID: 19100556
PMC: 2643323.
DOI: 10.1016/j.chroma.2008.11.090.
Relative binding affinities of monovalent cations for double-stranded DNA.
Bleam M, Anderson C, Record M
Proc Natl Acad Sci U S A. 1980; 77(6):3085-9.
PMID: 16592827
PMC: 349556.
DOI: 10.1073/pnas.77.6.3085.
Na+ shows a markedly higher potential than K+ in DNA compaction in a crowded environment.
Zinchenko A, Yoshikawa K
Biophys J. 2005; 88(6):4118-23.
PMID: 15778438
PMC: 1305642.
DOI: 10.1529/biophysj.104.057323.
Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics.
Hammermann M, Steinmaier C, Merlitz H, Kapp U, Waldeck W, Chirico G
Biophys J. 1997; 73(5):2674-87.
PMID: 9370461
PMC: 1181169.
DOI: 10.1016/S0006-3495(97)78296-1.
Winding of the DNA helix by divalent metal ions.
Xu Y, Bremer H
Nucleic Acids Res. 1997; 25(20):4067-71.
PMID: 9321659
PMC: 147022.
DOI: 10.1093/nar/25.20.4067.