Skrbic T, Giacometti A, Hoang T, Maritan A, Banavar J
Polymers (Basel). 2024; 16(4).
PMID: 38399880
PMC: 10892082.
DOI: 10.3390/polym16040502.
Yoo J, Park S, Maffeo C, Ha T, Aksimentiev A
Nucleic Acids Res. 2021; 49(20):11459-11475.
PMID: 34718725
PMC: 8599915.
DOI: 10.1093/nar/gkab967.
Negi V, Picu R
Soft Matter. 2020; 17(45):10186-10197.
PMID: 33030165
PMC: 8026777.
DOI: 10.1039/d0sm01297a.
Feng B, Sosa R, Martensson A, Jiang K, Tong A, Dorfman K
Proc Natl Acad Sci U S A. 2019; 116(35):17169-17174.
PMID: 31413203
PMC: 6717297.
DOI: 10.1073/pnas.1909122116.
Murugesapillai D, McCauley M, Maher 3rd L, Williams M
Biophys Rev. 2017; 9(1):17-40.
PMID: 28303166
PMC: 5331113.
DOI: 10.1007/s12551-016-0236-4.
Comprehensive nucleosome mapping of the human genome in cancer progression.
Druliner B, Vera D, Johnson R, Ruan X, Apone L, Dimalanta E
Oncotarget. 2016; 7(12):13429-45.
PMID: 26735342
PMC: 4924652.
DOI: 10.18632/oncotarget.6811.
Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC).
Galindo-Murillo R, Roe D, Cheatham 3rd T
Biochim Biophys Acta. 2014; 1850(5):1041-1058.
PMID: 25219455
PMC: 4339415.
DOI: 10.1016/j.bbagen.2014.09.007.
Mixed confinement regimes during equilibrium confinement spectroscopy of DNA.
Gupta D, Sheats J, Muralidhar A, Miller J, Huang D, Mahshid S
J Chem Phys. 2014; 140(21):214901.
PMID: 24908035
PMC: 4048444.
DOI: 10.1063/1.4879515.
Interplay between chain stiffness and excluded volume of semiflexible polymers confined in nanochannels.
Muralidhar A, Tree D, Wang Y, Dorfman K
J Chem Phys. 2014; 140(8):084905.
PMID: 24588196
PMC: 3977884.
DOI: 10.1063/1.4865965.
Comment on the letter by A. Ben-Shaul: "entropy, energy, and bending of DNA in viral capsids".
Harvey S
Biophys J. 2014; 106(2):489-92.
PMID: 24461024
PMC: 3907254.
DOI: 10.1016/j.bpj.2013.12.012.
Is DNA a Good Model Polymer?.
Tree D, Muralidhar A, Doyle P, Dorfman K
Macromolecules. 2013; 46(20).
PMID: 24347685
PMC: 3859536.
DOI: 10.1021/ma401507f.
Strong bending of the DNA double helix.
Vologodskii A, Frank-Kamenetskii M
Nucleic Acids Res. 2013; 41(14):6785-92.
PMID: 23677618
PMC: 3737528.
DOI: 10.1093/nar/gkt396.
PT-ACRAMTU, a platinum-acridine anticancer agent, lengthens and aggregates, but does not stiffen or soften DNA.
Dutta S, Snyder M, Rosile D, Binz K, Roll E, Suryadi J
Cell Biochem Biophys. 2013; 67(3):1103-13.
PMID: 23636685
PMC: 3767762.
DOI: 10.1007/s12013-013-9614-8.
Single-molecule kinetics reveal microscopic mechanism by which High-Mobility Group B proteins alter DNA flexibility.
McCauley M, Rueter E, Rouzina I, Maher 3rd L, Williams M
Nucleic Acids Res. 2012; 41(1):167-81.
PMID: 23143110
PMC: 3592474.
DOI: 10.1093/nar/gks1031.
The entropic cost of polymer confinement.
Smyda M, Harvey S
J Phys Chem B. 2012; 116(35):10928-34.
PMID: 22905742
PMC: 3471378.
DOI: 10.1021/jp302807r.
Basic N-terminus of yeast Nhp6A regulates the mechanism of its DNA flexibility enhancement.
Zhang J, McCauley M, Maher 3rd L, Williams M, Israeloff N
J Mol Biol. 2011; 416(1):10-20.
PMID: 22197373
PMC: 3280093.
DOI: 10.1016/j.jmb.2011.12.004.
Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains.
Moukhtar J, Vaillant C, Audit B, Arneodo A
Eur Phys J E Soft Matter. 2011; 34(11):119.
PMID: 22083495
DOI: 10.1140/epje/i2011-11119-3.
Temperature dependence of DNA persistence length.
Geggier S, Kotlyar A, Vologodskii A
Nucleic Acids Res. 2010; 39(4):1419-26.
PMID: 20952402
PMC: 3045604.
DOI: 10.1093/nar/gkq932.
Sequence dependence of DNA bending rigidity.
Geggier S, Vologodskii A
Proc Natl Acad Sci U S A. 2010; 107(35):15421-6.
PMID: 20702767
PMC: 2932579.
DOI: 10.1073/pnas.1004809107.
Biophysical characterization of DNA binding from single molecule force measurements.
Chaurasiya K, Paramanathan T, McCauley M, Williams M
Phys Life Rev. 2010; 7(3):299-341.
PMID: 20576476
PMC: 2930095.
DOI: 10.1016/j.plrev.2010.06.001.
