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A Strategy of DNA Sequencing Employing Computer Programs

Overview
Specialty Biochemistry
Date 1979 Jun 11
PMID 461197
Citations 129
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Abstract

With modern fast sequencing techniques and suitable computer programs it is now possible to sequence whole genomes without the need of restriction maps. This paper describes computer programs that can be used to order both sequence gel readings and clones. A method of coding for uncertainties in gel readings is described. These programs are available on request.

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References
1.
GODSON G, Barrell B, Staden R, Fiddes J . Nucleotide sequence of bacteriophage G4 DNA. Nature. 1978; 276(5685):236-47. DOI: 10.1038/276236a0. View

2.
SANGER F, Nicklen S, Coulson A . DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A. 1977; 74(12):5463-7. PMC: 431765. DOI: 10.1073/pnas.74.12.5463. View

3.
Maxam A, Gilbert W . A new method for sequencing DNA. Proc Natl Acad Sci U S A. 1977; 74(2):560-4. PMC: 392330. DOI: 10.1073/pnas.74.2.560. View

4.
Staden R . Further procedures for sequence analysis by computer. Nucleic Acids Res. 1978; 5(3):1013-6. PMC: 342040. DOI: 10.1093/nar/5.3.1013. View

5.
SANGER F, Coulson A . The use of thin acrylamide gels for DNA sequencing. FEBS Lett. 1978; 87(1):107-10. DOI: 10.1016/0014-5793(78)80145-8. View