Mani H, Chang C, Hsu H, Yang C, Yen J, Liou J
Bioengineering (Basel). 2023; 10(9).
PMID: 37760106
PMC: 10525864.
DOI: 10.3390/bioengineering10091004.
Finkelstein A, Bogatyreva N, Ivankov D, Garbuzynskiy S
Biophys Rev. 2023; 14(6):1255-1272.
PMID: 36659994
PMC: 9842845.
DOI: 10.1007/s12551-022-01000-1.
Stapor K, Kotowski K, Smolarczyk T, Roterman I
BMC Bioinformatics. 2022; 23(1):100.
PMID: 35317722
PMC: 8939211.
DOI: 10.1186/s12859-022-04623-z.
Abdelsalam N, Balbaa M, Osman H, Ghareeb R, Desoky E, Elshehawi A
Saudi J Biol Sci. 2022; 29(3):1747-1759.
PMID: 35280531
PMC: 8913385.
DOI: 10.1016/j.sjbs.2021.10.055.
Rademaker D, van Dijk J, Titulaer W, Lange J, Vriend G, Xue L
Biomolecules. 2020; 10(6).
PMID: 32560074
PMC: 7355469.
DOI: 10.3390/biom10060910.
Distribution of dipeptides in different protein structural classes: an effort to find new similarities.
Ghadimi M, Heshmati E, Khalifeh K
Eur Biophys J. 2017; 47(1):31-38.
PMID: 28612124
DOI: 10.1007/s00249-017-1226-6.
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?.
Yang Y, Gao J, Wang J, Heffernan R, Hanson J, Paliwal K
Brief Bioinform. 2017; 19(3):482-494.
PMID: 28040746
PMC: 5952956.
DOI: 10.1093/bib/bbw129.
Bayesian model of protein primary sequence for secondary structure prediction.
Li Q, Dahl D, Vannucci M, Joo H, Tsai J
PLoS One. 2014; 9(10):e109832.
PMID: 25314659
PMC: 4196994.
DOI: 10.1371/journal.pone.0109832.
Modelling of peptide and protein structures.
Fraga S, Parker J
Amino Acids. 2013; 7(2):175-202.
PMID: 24186049
DOI: 10.1007/BF00814159.
The effects of the codon usage and translation speed on protein folding of 3D(pol) of foot-and-mouth disease virus.
Ma X, Feng Y, Liu J, Ma B, Chen L, Zhao Y
Vet Res Commun. 2013; 37(3):243-50.
PMID: 23715863
DOI: 10.1007/s11259-013-9564-z.
An amino acid packing code for α-helical structure and protein design.
Joo H, Chavan A, Phan J, Day R, Tsai J
J Mol Biol. 2012; 419(3-4):234-54.
PMID: 22426125
PMC: 3867301.
DOI: 10.1016/j.jmb.2012.03.004.
Artificial Intelligence in Prediction of Secondary Protein Structure Using CB513 Database.
Avdagic Z, Purisevic E, Omanovic S, Coralic Z
Summit Transl Bioinform. 2011; 2009:1-5.
PMID: 21347158
PMC: 3041573.
Classification of G-protein coupled receptors based on support vector machine with maximum relevance minimum redundancy and genetic algorithm.
Li Z, Zhou X, Dai Z, Zou X
BMC Bioinformatics. 2010; 11:325.
PMID: 20550715
PMC: 2905366.
DOI: 10.1186/1471-2105-11-325.
Lipid-dependent Structural Changes of an Amphomorphic Membrane Protein.
Dunker A, Fodor S, Williams R
Biophys J. 2009; 37(1):201-3.
PMID: 19431478
PMC: 1329124.
DOI: 10.1016/S0006-3495(82)84669-9.
Position-specific residue preference features around the ends of helices and strands and a novel strategy for the prediction of secondary structures.
Duan M, Huang M, Ma C, Li L, Zhou Y
Protein Sci. 2008; 17(9):1505-12.
PMID: 18519808
PMC: 2525534.
DOI: 10.1110/ps.035691.108.
The Jpred 3 secondary structure prediction server.
Cole C, Barber J, Barton G
Nucleic Acids Res. 2008; 36(Web Server issue):W197-201.
PMID: 18463136
PMC: 2447793.
DOI: 10.1093/nar/gkn238.
An evolutionary method for learning HMM structure: prediction of protein secondary structure.
Won K, Hamelryck T, Prugel-Bennett A, Krogh A
BMC Bioinformatics. 2007; 8:357.
PMID: 17888163
PMC: 2072961.
DOI: 10.1186/1471-2105-8-357.
Prediction of the burial status of transmembrane residues of helical membrane proteins.
Park Y, Hayat S, Helms V
BMC Bioinformatics. 2007; 8:302.
PMID: 17708758
PMC: 2000914.
DOI: 10.1186/1471-2105-8-302.
Characterization of cDNA for nodulin-75 of soybean: A gene product involved in early stages of root nodule development.
Franssen H, Nap J, Gloudemans T, Stiekema W, Van Dam H, Govers F
Proc Natl Acad Sci U S A. 1987; 84(13):4495-9.
PMID: 16593857
PMC: 305116.
DOI: 10.1073/pnas.84.13.4495.
Early-stage folding in proteins (in silico) sequence-to-structure relation.
Brylinski M, Konieczny L, Czerwonko P, Jurkowski W, Roterman I
J Biomed Biotechnol. 2005; 2005(2):65-79.
PMID: 16046811
PMC: 1184056.
DOI: 10.1155/JBB.2005.65.
