Poly(d2NH2A-dT): Two-dimensional NMR Shows a B to A Conversion in High Salt
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Poly(d2NH2A-dT) forms a structure in high salt that is clearly distinct from the B form present in low salt. Two-dimensional nuclear Overhauser effect (2D NOE) NMR spectra establish that the conformation of the high-salt form is not Z. Correlations of observed cross peaks in the 2D NOE spectra and estimated interproton distances of the common DNA conformations are consistent only with an A form or closely related structure. This interpretation is also consistent with the negative circular dichroic band observed in the high-salt form of poly(d2NH2A-dT) and in A-form ribohomopolymer helices containing 2NH2A.
Madaoui M, Datta D, Wassarman K, Zlatev I, Egli M, Ross B Org Lett. 2022; 24(33):6111-6116.
PMID: 35973215 PMC: 9425559. DOI: 10.1021/acs.orglett.2c01848.
The Cucurbit[7]Uril-Based Supramolecular Chemistry for Reversible B/Z-DNA Transition.
Wang S, Wang J, Xu G, Wei L, Fu B, Wu L Adv Sci (Weinh). 2018; 5(7):1800231.
PMID: 30027051 PMC: 6051393. DOI: 10.1002/advs.201800231.
Circular dichroism and conformational polymorphism of DNA.
Kypr J, Kejnovska I, Renciuk D, Vorlickova M Nucleic Acids Res. 2009; 37(6):1713-25.
PMID: 19190094 PMC: 2665218. DOI: 10.1093/nar/gkp026.
Conformational transitions of alternating purine-pyrimidine DNAs in perchlorate ethanol solutions.
Vorlickova M Biophys J. 1995; 69(5):2033-43.
PMID: 8580346 PMC: 1236436. DOI: 10.1016/S0006-3495(95)80073-1.
Thermodynamic studies of base pairing involving 2,6-diaminopurine.
Cheong C, Tinoco Jr I, Chollet A Nucleic Acids Res. 1988; 16(11):5115-22.
PMID: 3387218 PMC: 336721. DOI: 10.1093/nar/16.11.5115.