Claeys Bouuaert C, Tischfield S, Pu S, Mimitou E, Arias-Palomo E, Berger J
Nat Struct Mol Biol. 2021; 28(1):92-102.
PMID: 33398171
PMC: 7855791.
DOI: 10.1038/s41594-020-00534-w.
Medos Z, Plechkova N, Friesen S, Buchner R, Bester-Rogac M
Langmuir. 2019; 35(10):3759-3772.
PMID: 30754971
PMC: 6727610.
DOI: 10.1021/acs.langmuir.8b03993.
Scheidt H, Klingler J, Huster D, Keller S
Biophys J. 2015; 109(3):586-94.
PMID: 26244740
PMC: 4572497.
DOI: 10.1016/j.bpj.2015.06.051.
Weichenberger C, Afonine P, Kantardjieff K, Rupp B
Acta Crystallogr D Biol Crystallogr. 2015; 71(Pt 5):1023-38.
PMID: 25945568
PMC: 4427195.
DOI: 10.1107/S1399004715006045.
Takahashi S, Sugimoto N
Molecules. 2013; 18(11):13297-319.
PMID: 24172240
PMC: 6270079.
DOI: 10.3390/molecules181113297.
Characterization of void space in polydisperse sphere packings: Applications to hard-sphere packings and to protein structure analysis.
Maiti M, Lakshminarayanan A, Sastry S
Eur Phys J E Soft Matter. 2013; 36(1):5.
PMID: 23355091
DOI: 10.1140/epje/i2013-13005-4.
An amino acid packing code for α-helical structure and protein design.
Joo H, Chavan A, Phan J, Day R, Tsai J
J Mol Biol. 2012; 419(3-4):234-54.
PMID: 22426125
PMC: 3867301.
DOI: 10.1016/j.jmb.2012.03.004.
Identification of amino acids critical for the cytotoxicity of Shiga toxin 1 and 2 in Saccharomyces cerevisiae.
Di R, Kyu E, Shete V, Saidasan H, Kahn P, Tumer N
Toxicon. 2010; 57(4):525-39.
PMID: 21184769
PMC: 3055938.
DOI: 10.1016/j.toxicon.2010.12.006.
The interplay of ligand binding and quaternary structure in the diverse interactions of dynein light chain LC8.
Benison G, Karplus P, Barbar E
J Mol Biol. 2008; 384(4):954-66.
PMID: 18948118
PMC: 4294432.
DOI: 10.1016/j.jmb.2008.09.083.
Paradigm development: comparative and predictive 3D modeling of HIV-1 Virion Infectivity Factor (Vif).
Balaji S, Kalpana R, Shapshak P
Bioinformation. 2007; 1(8):290-309.
PMID: 17597910
PMC: 1891711.
DOI: 10.6026/97320630001290.
Effects of serine-to-cysteine mutations on beta-lactamase folding.
Santos J, Risso V, Sica M, Ermacora M
Biophys J. 2007; 93(5):1707-18.
PMID: 17496026
PMC: 1948053.
DOI: 10.1529/biophysj.106.103804.
Assessing implicit models for nonpolar mean solvation forces: the importance of dispersion and volume terms.
Wagoner J, Baker N
Proc Natl Acad Sci U S A. 2006; 103(22):8331-6.
PMID: 16709675
PMC: 1482494.
DOI: 10.1073/pnas.0600118103.
Explanation of the stability of thermophilic proteins based on unique micromorphology.
Melchionna S, Sinibaldi R, Briganti G
Biophys J. 2006; 90(11):4204-12.
PMID: 16533850
PMC: 1459513.
DOI: 10.1529/biophysj.105.078972.
Molecular dynamics simulation of matrix metalloproteinase 2: fluctuations and time evolution of recognition pockets.
Falconi M, Altobelli G, Iovino M, Politi V, Desideria A
J Comput Aided Mol Des. 2004; 17(12):837-48.
PMID: 15124932
DOI: 10.1023/b:jcam.0000021883.44532.75.
Membrane model for the G-protein-coupled receptor rhodopsin: hydrophobic interface and dynamical structure.
Huber T, Botelho A, Beyer K, Brown M
Biophys J. 2004; 86(4):2078-100.
PMID: 15041649
PMC: 1304060.
DOI: 10.1016/S0006-3495(04)74268-X.
Elastic coupling of integral membrane protein stability to lipid bilayer forces.
Hong H, Tamm L
Proc Natl Acad Sci U S A. 2004; 101(12):4065-70.
PMID: 14990786
PMC: 384696.
DOI: 10.1073/pnas.0400358101.
Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
Yu B, Blaber M, Gronenborn A, Clore G, Caspar D
Proc Natl Acad Sci U S A. 1999; 96(1):103-8.
PMID: 9874779
PMC: 15100.
DOI: 10.1073/pnas.96.1.103.
A database of macromolecular motions.
Gerstein M, Krebs W
Nucleic Acids Res. 1998; 26(18):4280-90.
PMID: 9722650
PMC: 147832.
DOI: 10.1093/nar/26.18.4280.
Free energy of burying hydrophobic residues in the interface between protein subunits.
Vallone B, Miele A, VECCHINI P, CHIANCONE E, Brunori M
Proc Natl Acad Sci U S A. 1998; 95(11):6103-7.
PMID: 9600924
PMC: 27592.
DOI: 10.1073/pnas.95.11.6103.
Heterogeneity of packing: structural approach.
Kurochkina N, Privalov G
Protein Sci. 1998; 7(4):897-905.
PMID: 9568896
PMC: 2143988.
DOI: 10.1002/pro.5560070407.
