» Articles » PMID: 40076700

Single-Cell Sequencing: Genomic and Transcriptomic Approaches in Cancer Cell Biology

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2025 Mar 13
PMID 40076700
Authors
Affiliations
Soon will be listed here.
Abstract

This article reviews the impact of single-cell sequencing (SCS) on cancer biology research. SCS has revolutionized our understanding of cancer and tumor heterogeneity, clonal evolution, and the complex interplay between cancer cells and tumor microenvironment. SCS provides high-resolution profiling of individual cells in genomic, transcriptomic, and epigenomic landscapes, facilitating the detection of rare mutations, the characterization of cellular diversity, and the integration of molecular data with phenotypic traits. The integration of SCS with multi-omics has provided a multidimensional view of cellular states and regulatory mechanisms in cancer, uncovering novel regulatory mechanisms and therapeutic targets. Advances in computational tools, artificial intelligence (AI), and machine learning have been crucial in interpreting the vast amounts of data generated, leading to the identification of new biomarkers and the development of predictive models for patient stratification. Furthermore, there have been emerging technologies such as spatial transcriptomics and in situ sequencing, which promise to further enhance our understanding of tumor microenvironment organization and cellular interactions. As SCS and its related technologies continue to advance, they are expected to drive significant advances in personalized cancer diagnostics, prognosis, and therapy, ultimately improving patient outcomes in the era of precision oncology.

References
1.
Zhang K, Chen Y, Zhu J, Ge X, Wu J, Xu P . Advancement of single-cell sequencing for clinical diagnosis and treatment of pancreatic cancer. Front Med (Lausanne). 2023; 10:1213136. PMC: 10501729. DOI: 10.3389/fmed.2023.1213136. View

2.
Gao Y, Ni X, Guo H, Su Z, Ba Y, Tong Z . Single-cell sequencing deciphers a convergent evolution of copy number alterations from primary to circulating tumor cells. Genome Res. 2017; 27(8):1312-1322. PMC: 5538548. DOI: 10.1101/gr.216788.116. View

3.
Lin D, Shen L, Luo M, Zhang K, Li J, Yang Q . Circulating tumor cells: biology and clinical significance. Signal Transduct Target Ther. 2021; 6(1):404. PMC: 8606574. DOI: 10.1038/s41392-021-00817-8. View

4.
Lee J, Bernard V, Semaan A, Monberg M, Huang J, Stephens B . Elucidation of Tumor-Stromal Heterogeneity and the Ligand-Receptor Interactome by Single-Cell Transcriptomics in Real-world Pancreatic Cancer Biopsies. Clin Cancer Res. 2021; 27(21):5912-5921. PMC: 8563410. DOI: 10.1158/1078-0432.CCR-20-3925. View

5.
Shen X, Dai J, Guo L, Liu Z, Yang L, Gu D . Single-cell low-pass whole genome sequencing accurately detects circulating tumor cells for liquid biopsy-based multi-cancer diagnosis. NPJ Precis Oncol. 2024; 8(1):30. PMC: 10847465. DOI: 10.1038/s41698-024-00520-1. View