» Articles » PMID: 39883340

Advancing Chromosomal-scale, Haplotype-resolved Genome Assembly: Beading with Hi-C Data

Overview
Date 2025 Jan 30
PMID 39883340
Authors
Affiliations
Soon will be listed here.
References
1.
Zhang X, Chen S, Shi L, Gong D, Zhang S, Zhao Q . Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis. Nat Genet. 2021; 53(8):1250-1259. PMC: 8346365. DOI: 10.1038/s41588-021-00895-y. View

2.
Zhang J, Zhang X, Tang H, Zhang Q, Hua X, Ma X . Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L. Nat Genet. 2018; 50(11):1565-1573. DOI: 10.1038/s41588-018-0237-2. View

3.
Zhang X, Zhang S, Zhao Q, Ming R, Tang H . Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data. Nat Plants. 2019; 5(8):833-845. DOI: 10.1038/s41477-019-0487-8. View

4.
Kong Q, Jiang Y, Sun M, Wang Y, Zhang L, Zeng X . Biparental graph strategy to represent and analyze hybrid plant genomes. Plant Physiol. 2024; 196(2):1284-1297. PMC: 11444280. DOI: 10.1093/plphys/kiae375. View

5.
Li H, Durbin R . Genome assembly in the telomere-to-telomere era. Nat Rev Genet. 2024; 25(9):658-670. DOI: 10.1038/s41576-024-00718-w. View