» Articles » PMID: 39766569

Embleporicin: A Novel Class I Lanthipeptide from the Actinobacteria Sp. NF3

Overview
Specialty Pharmacology
Date 2025 Jan 8
PMID 39766569
Authors
Affiliations
Soon will be listed here.
Abstract

Genome mining has emerged as a revolutionary tool for discovering new ribosomally synthesized and post-translationally modified peptides (RiPPs) in various genomes. Recently, these approaches have been used to detect and explore unique environments as sources of RiPP-producing microorganisms, particularly focusing on endophytic microorganisms found in medicinal plants. Some endophytic actinobacteria, especially strains of , are notable examples of peptide producers, as specific biosynthetic clusters encode them. To uncover the genetic potential of these organisms, we analyzed the genome of the endophytic actinobacterium sp. NF3 using genome mining and bioinformatics tools. Our analysis led to the identification of a putative class I lanthipeptide. We cloned the core biosynthetic genes of this putative lanthipeptide, named embleporicin, and expressed them in vitro using a cell-free protein system (CFPS). The resulting product demonstrated antimicrobial activity against ATCC 9341. This represents the first RiPP reported in the genus and the first actinobacterial lanthipeptide produced through cell-free technology.

References
1.
Bogart J, Cabezas M, Vogeli B, Wong D, Karim A, Jewett M . Cell-Free Exploration of the Natural Product Chemical Space. Chembiochem. 2020; 22(1):84-91. PMC: 8215586. DOI: 10.1002/cbic.202000452. View

2.
Caetano T, van der Donk W, Mendo S . Bacteroidetes can be a rich source of novel lanthipeptides: The case study of Pedobacter lusitanus. Microbiol Res. 2020; 235:126441. DOI: 10.1016/j.micres.2020.126441. View

3.
Ceapa C, Vazquez-Hernandez M, Rodriguez-Luna S, Cruz Vazquez A, Jimenez Suarez V, Rodriguez-Sanoja R . Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions. PLoS One. 2018; 13(2):e0192618. PMC: 5813959. DOI: 10.1371/journal.pone.0192618. View

4.
Ongpipattanakul C, Liu S, Luo Y, Nair S, van der Donk W . The mechanism of thia-Michael addition catalyzed by LanC enzymes. Proc Natl Acad Sci U S A. 2023; 120(3):e2217523120. PMC: 9934072. DOI: 10.1073/pnas.2217523120. View

5.
Cuthbertson L, Nodwell J . The TetR family of regulators. Microbiol Mol Biol Rev. 2013; 77(3):440-75. PMC: 3811609. DOI: 10.1128/MMBR.00018-13. View