Opinions and Suggestions on Nematode Faunal Analysis

Overview

Journal J Nematol

Date 2024 Dec 25

PMID 39720190

Authors

Howard Ferris

Ingrid Varela Benavides

Affiliations

Soon will be listed here.

Abstract

We briefly review the history and development of recognizing nematode assemblages as indicators of environmental conditions. We highlight the effects of spatio-temporal successional changes in nematode assemblages on the auto-regeneration of ecosystem functions after disturbance. We expand on the need for herbivory components in the analysis of soil nematode assemblages in recognition of the important impact of plant parasitism on the resources and productivity of the soil system. Finally, we point out some important areas of research that would enhance the process and value of nematode faunal analysis. We include an evaluation of the current potential for molecular assessment of nematode abundance and function and for the application of artificial intelligence in automated nematode identification.

References

Hanski I, Ovaskainen O . The metapopulation capacity of a fragmented landscape. Nature. 2000; 404(6779):755-8. DOI: 10.1038/35008063. View

Neher D, Campbell C . Sampling for regional monitoring of nematode communities in agricultural soils. J Nematol. 2009; 28(2):196-208. PMC: 2619689. View

Flemming A, Shen Z, Cunha A, Emmons S, Leroi A . Somatic polyploidization and cellular proliferation drive body size evolution in nematodes. Proc Natl Acad Sci U S A. 2000; 97(10):5285-90. PMC: 25820. DOI: 10.1073/pnas.97.10.5285. View

Fabian J, Zlatanovic S, Mutz M, Premke K . Fungal-bacterial dynamics and their contribution to terrigenous carbon turnover in relation to organic matter quality. ISME J. 2016; 11(2):415-425. PMC: 5270572. DOI: 10.1038/ismej.2016.131. View

Schneider T, Keiblinger K, Schmid E, Sterflinger-Gleixner K, Ellersdorfer G, Roschitzki B . Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions. ISME J. 2012; 6(9):1749-62. PMC: 3498922. DOI: 10.1038/ismej.2012.11. View

White J, Horvitz H, Sulston J . Neurone differentiation in cell lineage mutants of Caenorhabditis elegans. Nature. 1982; 297(5867):584-7. DOI: 10.1038/297584a0. View

Sanchez-Moreno S, Camargo J, Navas A . Ecotoxicological assessment of the impact of residual heavy metals on soil nematodes in the Guadiamar River Basin (Southern Spain). Environ Monit Assess. 2006; 116(1-3):245-62. DOI: 10.1007/s10661-006-7398-7. View

Bongers T . The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia. 2017; 83(1):14-19. DOI: 10.1007/BF00324627. View

Hedgecock E, White J . Polyploid tissues in the nematode Caenorhabditis elegans. Dev Biol. 1985; 107(1):128-33. DOI: 10.1016/0012-1606(85)90381-1. View

10.

Bongers , Ferris . Nematode community structure as a bioindicator in environmental monitoring. Trends Ecol Evol. 1999; 14(6):224-228. DOI: 10.1016/s0169-5347(98)01583-3. View

11.

Sulston J, Horvitz H . Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. Dev Biol. 1977; 56(1):110-56. DOI: 10.1016/0012-1606(77)90158-0. View

12.

Tenuta M, Ferris H . Sensitivity of nematode life-history groups to ions and osmotic tensions of nitrogenous solutions. J Nematol. 2009; 36(1):85-94. PMC: 2620732. View

13.

Yeates G, Bongers T, De Goede R, Freckman D, Georgieva S . Feeding habits in soil nematode families and genera-an outline for soil ecologists. J Nematol. 2009; 25(3):315-31. PMC: 2619405. View

14.

Filgueiras C, Kim Y, Wickings K, El Borai F, Duncan L, Willett D . The Smart Soil Organism Detector: An instrument and machine learning pipeline for soil species identification. Biosens Bioelectron. 2022; 221:114417. DOI: 10.1016/j.bios.2022.114417. View