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Elucidation of Ubiquitin-Related Functions Via an Ubiquitin Overexpression Approach

Overview
Journal Cells
Publisher MDPI
Date 2024 Dec 17
PMID 39682759
Authors
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Abstract

To identify new ubiquitin-related functions using yeast, we searched for mutants conferring a temperature-sensitivity phenotype that could be rescued through ubiquitin overexpression. Screening of mutants using this overexpression strategy identified , which encodes a subunit of the endoplasmic reticulum (ER) signal peptidase complex (SPC). Ubiquitin overexpression rescued a high-temperature sensitivity of deletion mutant, suggesting that ubiquitin could compensate for Spc2 loss-of-function at high temperatures. The double mutant of Spc2 and Hrd1, an ER E3 ubiquitin ligase, showed a synergistic growth defect at higher temperatures. A weak genetic interaction was also observed between spc2Δ and mutation. The results suggest a close functional relationship between SPC and the ubiquitin-proteasome system in yeast and further provide proof-of-principle for this ubiquitin overexpression approach to identify novel ubiquitin-related genes and associated cellular processes.

References
1.
Jarosch E, Taxis C, Volkwein C, Bordallo J, Finley D, Wolf D . Protein dislocation from the ER requires polyubiquitination and the AAA-ATPase Cdc48. Nat Cell Biol. 2002; 4(2):134-9. DOI: 10.1038/ncb746. View

2.
Kimura Y, Tanigawa M, Kawawaki J, Takagi K, Mizushima T, Maeda T . Conserved Mode of Interaction between Yeast Bro1 Family V Domains and YP(X)nL Motif-Containing Target Proteins. Eukaryot Cell. 2015; 14(10):976-82. PMC: 4588623. DOI: 10.1128/EC.00091-15. View

3.
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A . The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010; 20(9):1297-303. PMC: 2928508. DOI: 10.1101/gr.107524.110. View

4.
Bolger A, Lohse M, Usadel B . Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014; 30(15):2114-20. PMC: 4103590. DOI: 10.1093/bioinformatics/btu170. View

5.
Amerik A, Nowak J, Swaminathan S, Hochstrasser M . The Doa4 deubiquitinating enzyme is functionally linked to the vacuolar protein-sorting and endocytic pathways. Mol Biol Cell. 2000; 11(10):3365-80. PMC: 14998. DOI: 10.1091/mbc.11.10.3365. View