» Articles » PMID: 39656590

Protocol for Whole-mount Preparation, Clearing, and Visualization of the Adult Zebrafish Spinal Cord Structures

Overview
Journal STAR Protoc
Publisher Cell Press
Date 2024 Dec 10
PMID 39656590
Authors
Affiliations
Soon will be listed here.
Abstract

The vascular repair, a pivotal element of the spinal cord (SC) injury response, has been notably neglected in zebrafish research. Here, we detail the extraction and dissection of whole-mount zebrafish SCs and the optimized whole-mount immunofluorescence staining and clearing protocols for the visualization of SC structures, such as the vascular network. Additional downstream applications of these samples, from gelatin embedding to cryosectioning and tissue staining, can be done after clearing reversion and are also described in this work. For complete details on the use and execution of this protocol, please refer to Ribeiro et al..

References
1.
Hama H, Hioki H, Namiki K, Hoshida T, Kurokawa H, Ishidate F . ScaleS: an optical clearing palette for biological imaging. Nat Neurosci. 2015; 18(10):1518-29. DOI: 10.1038/nn.4107. View

2.
Su S, Yu N, Zhang H, Wu D, Cui H, Ma C . Sudan Black B treatment uncovers the distribution of angiotensin-converting enzyme2 in nociceptors. Mol Pain. 2022; 18:17448069221080305. PMC: 8873969. DOI: 10.1177/17448069221080305. View

3.
Kugler E, Rampun A, Chico T, Armitage P . Analytical Approaches for the Segmentation of the Zebrafish Brain Vasculature. Curr Protoc. 2022; 2(5):e443. DOI: 10.1002/cpz1.443. View

4.
Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H . Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nat Neurosci. 2011; 14(11):1481-8. DOI: 10.1038/nn.2928. View

5.
Yu H, Li Q, Sandoval Jr A, Gibbs H, English A, Dunn T . Pipeline for fluorescent imaging and volumetric analysis of neurons in cleared mouse spinal cords. STAR Protoc. 2022; 3(4):101759. PMC: 9576748. DOI: 10.1016/j.xpro.2022.101759. View