Draft Genome Sequences of Two Distinct Isolates Coinfecting a Patient
Overview
Overview
Journal
Microbiol Resour Announc
Publisher
American Society for Microbiology
Specialty
Microbiology
Date
2024 Dec 10
PMID
39655932
Authors
Authors
Affiliations
Affiliations
Soon will be listed here.
Abstract
is a spore-forming anaerobic Gram-positive bacillus. In this study, two distinct strains of causing coinfection were isolated from the same fecal sample. Whole-genome sequencing was performed on these two strains to elucidate their genomic characteristics.
References
1.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki E, Zaslavsky L
. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016; 44(14):6614-24.
PMC: 5001611.
DOI: 10.1093/nar/gkw569.
View
2.
Jain C, Rodriguez-R L, Phillippy A, Konstantinidis K, Aluru S
. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nat Commun. 2018; 9(1):5114.
PMC: 6269478.
DOI: 10.1038/s41467-018-07641-9.
View
3.
Persson S, Torpdahl M, Olsen K
. New multiplex PCR method for the detection of Clostridium difficile toxin A (tcdA) and toxin B (tcdB) and the binary toxin (cdtA/cdtB) genes applied to a Danish strain collection. Clin Microbiol Infect. 2008; 14(11):1057-64.
DOI: 10.1111/j.1469-0691.2008.02092.x.
View
4.
Lemee L, Dhalluin A, Testelin S, Mattrat M, Maillard K, Lemeland J
. Multiplex PCR targeting tpi (triose phosphate isomerase), tcdA (Toxin A), and tcdB (Toxin B) genes for toxigenic culture of Clostridium difficile. J Clin Microbiol. 2004; 42(12):5710-4.
PMC: 535266.
DOI: 10.1128/JCM.42.12.5710-5714.2004.
View
5.
Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov A
. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012; 19(5):455-77.
PMC: 3342519.
DOI: 10.1089/cmb.2012.0021.
View