Phylogeny, Diversification, and Biogeography of (Cypriniformes: Cyprinidae) Reveals Multiple Cross-Drainage Dispersals in Southeast Asia

Overview

Journal Ecol Evol

Date 2024 Nov 18

PMID 39554884

Authors

Zhi-Bang Wang

Thaung Naing Oo

Lan-Ping Zheng

Xiao-Yong Chen

Affiliations

Soon will be listed here.

Abstract

, a kind of small- to medium-sized fish, is widely distributed from southern Eurasia to central Africa. As one of the most diverse genera of Cyprinidae, investigating the phylogeny and biogeography of remains challenging. In this study, we combined sequences of samples collected from Myanmar with sequences downloaded from GenBank to investigate the phylogeny, diversification, and biogeography of on a global scale, with an emphasis on Southeast Asia. Species delimitation results indicated that there are at least 22 potential species, including eight undescribed species in Myanmar, suggesting that the diversity of in this region have been largely underestimated. Diversification analysis suggested a relatively high diversification rate in the early branches of . Ancestral distribution reconstruction results revealed that originated from the Irrawaddy River basin in the late Eocene, approximately 34 million years ago, with subsequent dispersals across different drainages influenced by the uplift of the Qinghai-Tibet Plateau. Our study provided a new insight into the evolutionary history of and the basis for further research on this genus.

References

Lanfear R, Frandsen P, Wright A, Senfeld T, Calcott B . PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses. Mol Biol Evol. 2016; 34(3):772-773. DOI: 10.1093/molbev/msw260. View

Suchard M, Lemey P, Baele G, Ayres D, Drummond A, Rambaut A . Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 2018; 4(1):vey016. PMC: 6007674. DOI: 10.1093/ve/vey016. View

Katoh K, Standley D . MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013; 30(4):772-80. PMC: 3603318. DOI: 10.1093/molbev/mst010. View

He S, Cao W, Chen Y . The uplift of Qinghai-Xizang (Tibet) Plateau and the vicariance speciation of glyptosternoid fishes (Siluriformes: Sisoridae). Sci China C Life Sci. 2008; 44(6):644-51. DOI: 10.1007/BF02879359. View

Paradis E, Schliep K . ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics. 2018; 35(3):526-528. DOI: 10.1093/bioinformatics/bty633. View

Zhang D, Gao F, Jakovlic I, Zou H, Zhang J, Li W . PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 2019; 20(1):348-355. DOI: 10.1111/1755-0998.13096. View

Peng Z, Ho S, Zhang Y, He S . Uplift of the Tibetan plateau: evidence from divergence times of glyptosternoid catfishes. Mol Phylogenet Evol. 2005; 39(2):568-72. DOI: 10.1016/j.ympev.2005.10.016. View

Arrigoni R, Berumen M, Chen C, Terraneo T, Baird A, Payri C . Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Mol Phylogenet Evol. 2016; 105:146-159. DOI: 10.1016/j.ympev.2016.08.023. View

Minh B, Schmidt H, Chernomor O, Schrempf D, Woodhams M, von Haeseler A . IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era. Mol Biol Evol. 2020; 37(5):1530-1534. PMC: 7182206. DOI: 10.1093/molbev/msaa015. View

10.

Yu Y, Blair C, He X . RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters. Mol Biol Evol. 2019; 37(2):604-606. DOI: 10.1093/molbev/msz257. View

11.

Puillandre N, Brouillet S, Achaz G . ASAP: assemble species by automatic partitioning. Mol Ecol Resour. 2020; 21(2):609-620. DOI: 10.1111/1755-0998.13281. View

12.

Yang L, Arunachalam M, Sado T, Levin B, Golubtsov A, Freyhof J . Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Mol Phylogenet Evol. 2012; 65(2):362-79. DOI: 10.1016/j.ympev.2012.06.007. View

13.

Qin T, Chen Z, Xu L, Zaw P, Kyaw Y, Maung K . Five newly recorded Cyprinid fish (Teleostei: Cypriniformes) in Myanmar. Zool Res. 2017; 38(5):300-309. PMC: 5717430. DOI: 10.24272/j.issn.2095-8137.2017.063. View

14.

Burridge C, Craw D, Waters J . River capture, range expansion, and cladogenesis: the genetic signature of freshwater vicariance. Evolution. 2006; 60(5):1038-49. View

15.

Thoni R, Gurung D, Mayden R . A review of the genus Garra Hamilton 1822 of Bhutan, including the descriptions of two new species and three additional records (Cypriniformes: Cyprinidae). Zootaxa. 2016; 4169(1):115-132. DOI: 10.11646/zootaxa.4169.1.5. View

16.

Sodhi N, Koh L, Brook B, Ng P . Southeast Asian biodiversity: an impending disaster. Trends Ecol Evol. 2006; 19(12):654-60. DOI: 10.1016/j.tree.2004.09.006. View

17.

Sun C, Li X, Zhou W, Li F . A review of Garra (Teleostei: Cypriniformes) from two rivers in West Yunnan, China with description of a new species. Zootaxa. 2018; 4378(1):49-70. DOI: 10.11646/zootaxa.4378.1.3. View

18.

Urban M . Climate change. Accelerating extinction risk from climate change. Science. 2015; 348(6234):571-3. DOI: 10.1126/science.aaa4984. View

19.

Burridge C, Craw D, Waters J . An empirical test of freshwater vicariance via river capture. Mol Ecol. 2007; 16(9):1883-95. DOI: 10.1111/j.1365-294X.2006.03196.x. View

20.

Rabosky D . Automatic detection of key innovations, rate shifts, and diversity-dependence on phylogenetic trees. PLoS One. 2014; 9(2):e89543. PMC: 3935878. DOI: 10.1371/journal.pone.0089543. View