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MicroRNA319-mediated Gene Regulatory Network Impacts Leaf Development and Morphogenesis in Poplar

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Date 2024 Nov 11
PMID 39524520
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Abstract

MicroRNA319 (miR319) has been implicated in leaf development in a number of plant species. Here we study the roles of miR319a and its regulated network in leaf development in poplars. Over-expression of miR319a in × caused dwarf statures, narrow leaf blades and serrated leaf margins. The vascular bundles and bundle sheaths in transgenic leaves had more layers of cells than those in the leaves of control plants, indicating enhanced lignification in these cells. Among the 93 putative targets of miR319a predicted with the psRNATarget tool, only three genes, (, , and ), were differentially expressed in the leaves of -over-expression transgenic lines. With the RNA-seq data sets from multiple over-expression transgenic lines, we built a three-layered gene regulatory network mediated by miR319a using Top-down graphic Gaussian model (GGM) algorithm that is capable of capturing causal relationships from transcriptomic data. The results support that primarily regulates the lignin biosynthesis, leaf development and differentiation as well as photosynthesis via , and regulatory modules.

References
1.
Speer E . A method of retaining phloroglucinol proof of lignin. Stain Technol. 1987; 62(4):279-80. DOI: 10.3109/10520298709108008. View

2.
Lim P, Kim H, Nam H . Leaf senescence. Annu Rev Plant Biol. 2006; 58:115-36. DOI: 10.1146/annurev.arplant.57.032905.105316. View

3.
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley D . Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012; 7(3):562-78. PMC: 3334321. DOI: 10.1038/nprot.2012.016. View

4.
Ursache R, Miyashima S, Chen Q, Vaten A, Nakajima K, Carlsbecker A . Tryptophan-dependent auxin biosynthesis is required for HD-ZIP III-mediated xylem patterning. Development. 2014; 141(6):1250-9. PMC: 7055496. DOI: 10.1242/dev.103473. View

5.
Li Q, Min D, Wang J, Peszlen I, Horvath L, Horvath B . Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood. Tree Physiol. 2011; 31(2):226-36. DOI: 10.1093/treephys/tpr008. View