Draft Genome Sequence of an Arsenotrophic Strain Isolated from Soil in Bangladesh

Overview

Journal Microbiol Resour Announc

Publisher American Society for Microbiology

Specialty Microbiology

Date 2024 Sep 24

PMID 39315834

Authors

M Nazmul Hoque

Anamica Hossain

Golam Mahbub Faisal

Momtaz Zamila Bukharid

M Anwar Hossain

Munawar Sultana

Affiliations

Soon will be listed here.

Abstract

We report the draft genome of an arsenotrophic BAS32 isolated from arsenic (As)-contaminated soil in Bangladesh. This genome contains several predicted gene clusters for As-conversion, namely, As resistance (HCsO), arsenite-oxidizing (BA), and arsenate-reducing (RCDAB) gene clusters along with antibiotic resistance genes (ARGs).

Citing Articles

Arsenotrophic Achromobacter aegrifaciens strains isolated from arsenic contaminated tubewell water and soil sources shared similar genomic potentials.

Hoque M, Mannan A, Hossian A, Faisal G, Hossain M, Sultana M BMC Microbiol. 2024; 24(1):518.

PMID: 39627700 PMC: 11616139. DOI: 10.1186/s12866-024-03676-9.

References

Hutt L, Harper G, Moody A, Boden R . Insights into growth kinetics and roles of enzymes of Krebs' cycle and sulfur oxidation during exochemolithoheterotrophic growth of Achromobacter aegrifaciens NCCB 38021 on succinate with thiosulfate as the auxiliary electron donor. Arch Microbiol. 2020; 203(2):561-578. DOI: 10.1007/s00203-020-02028-1. View

Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki E, Zaslavsky L . NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016; 44(14):6614-24. PMC: 5001611. DOI: 10.1093/nar/gkw569. View

Grant J, Enns E, Marinier E, Mandal A, Herman E, Chen C . Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res. 2023; 51(W1):W484-W492. PMC: 10320063. DOI: 10.1093/nar/gkad326. View

Hoque M, Moyna Z, Faisal G, Das Z, Islam T . Whole-Genome Sequence of Multidrug-Resistant Klebsiella pneumoniae MNH_G2C5, Isolated from Bovine Clinical Mastitis Milk. Microbiol Resour Announc. 2023; 12(5):e0007923. PMC: 10190633. DOI: 10.1128/mra.00079-23. View

Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov A . SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012; 19(5):455-77. PMC: 3342519. DOI: 10.1089/cmb.2012.0021. View

Parks D, Imelfort M, Skennerton C, Hugenholtz P, Tyson G . CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 2015; 25(7):1043-55. PMC: 4484387. DOI: 10.1101/gr.186072.114. View

Veltri D, Wight M, Crouch J . SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species. Nucleic Acids Res. 2016; 44(W1):W41-5. PMC: 4987899. DOI: 10.1093/nar/gkw330. View

Alcock B, Huynh W, Chalil R, Smith K, Raphenya A, Wlodarski M . CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database. Nucleic Acids Res. 2022; 51(D1):D690-D699. PMC: 9825576. DOI: 10.1093/nar/gkac920. View

Bolger A, Lohse M, Usadel B . Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014; 30(15):2114-20. PMC: 4103590. DOI: 10.1093/bioinformatics/btu170. View

10.

Diba F, Hoque M, Rahman M, Haque F, Rahman K, Moniruzzaman M . Metagenomic and culture-dependent approaches unveil active microbial community and novel functional genes involved in arsenic mobilization and detoxification in groundwater. BMC Microbiol. 2023; 23(1):241. PMC: 10466822. DOI: 10.1186/s12866-023-02980-0. View

11.

Gurevich A, Saveliev V, Vyahhi N, Tesler G . QUAST: quality assessment tool for genome assemblies. Bioinformatics. 2013; 29(8):1072-5. PMC: 3624806. DOI: 10.1093/bioinformatics/btt086. View

12.

Mishra S, Singh S, Pande V . Bacteria induced degradation of fluoranthene in minimal salt medium mediated by catabolic enzymes in vitro condition. Bioresour Technol. 2014; 164:299-308. DOI: 10.1016/j.biortech.2014.04.076. View

13.

Hoque M, Jerin S, Faisal G, Das Z, Islam T, Rahman A . Whole-Genome Sequence of Multidrug-Resistant Escherichia coli Strains Isolated from Mice with Mastitis. Microbiol Resour Announc. 2023; 12(7):e0032023. PMC: 10353464. DOI: 10.1128/mra.00320-23. View

14.

Diba F, Hossain Khan M, Uddin S, Istiaq A, Shuvo M, Rubayet Ul Alam A . Bioaccumulation and detoxification of trivalent arsenic by Achromobacter xylosoxidans BHW-15 and electrochemical detection of its transformation efficiency. Sci Rep. 2021; 11(1):21312. PMC: 8556249. DOI: 10.1038/s41598-021-00745-1. View