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Human Milk Variation is Shaped by Maternal Genetics and Impacts the Infant Gut Microbiome

Abstract

Human milk is a complex mix of nutritional and bioactive components that provide complete nourishment for the infant. However, we lack a systematic knowledge of the factors shaping milk composition and how milk variation influences infant health. Here, we characterize relationships between maternal genetics, milk gene expression, milk composition, and the infant fecal microbiome in up to 310 exclusively breastfeeding mother-infant pairs. We identified 482 genetic loci associated with milk gene expression unique to the lactating mammary gland and link these loci to breast cancer risk and human milk oligosaccharide concentration. Integrative analyses uncovered connections between milk gene expression and infant gut microbiome, including an association between the expression of inflammation-related genes with milk interleukin-6 (IL-6) concentration and the abundance of Bifidobacterium and Escherichia in the infant gut. Our results show how an improved understanding of the genetics and genomics of human milk connects lactation biology with maternal and infant health.

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References
1.
Jew B, Alvarez M, Rahmani E, Miao Z, Ko A, Garske K . Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. Nat Commun. 2020; 11(1):1971. PMC: 7181686. DOI: 10.1038/s41467-020-15816-6. View

2.
Fields D, George B, Williams M, Whitaker K, Allison D, Teague A . Associations between human breast milk hormones and adipocytokines and infant growth and body composition in the first 6 months of life. Pediatr Obes. 2017; 12 Suppl 1:78-85. PMC: 5540830. DOI: 10.1111/ijpo.12182. View

3.
Martin Carli J, Trahan G, Jones K, Hirsch N, Rolloff K, Dunn E . Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States: a Novel, Non-invasive Framework for Investigating Human Lactation Physiology. J Mammary Gland Biol Neoplasia. 2020; 25(4):367-387. PMC: 8016415. DOI: 10.1007/s10911-020-09466-z. View

4.
Casadio Y, Williams T, Lai C, Olsson S, Hepworth A, Hartmann P . Evaluation of a mid-infrared analyzer for the determination of the macronutrient composition of human milk. J Hum Lact. 2010; 26(4):376-83. DOI: 10.1177/0890334410376948. View

5.
Priya S, Burns M, Ward T, Mars R, Adamowicz B, Lock E . Identification of shared and disease-specific host gene-microbiome associations across human diseases using multi-omic integration. Nat Microbiol. 2022; 7(6):780-795. PMC: 9159953. DOI: 10.1038/s41564-022-01121-z. View