6.
Dolja V, Koonin E
. Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer. Virus Res. 2017; 244:36-52.
PMC: 5801114.
DOI: 10.1016/j.virusres.2017.10.020.
View
7.
Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki C, Lu S
. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 2016; 45(D1):D200-D203.
PMC: 5210587.
DOI: 10.1093/nar/gkw1129.
View
8.
Kafer S, Paraskevopoulou S, Zirkel F, Wieseke N, Donath A, Petersen M
. Re-assessing the diversity of negative strand RNA viruses in insects. PLoS Pathog. 2019; 15(12):e1008224.
PMC: 6932829.
DOI: 10.1371/journal.ppat.1008224.
View
9.
Solovyev A, Morozov S
. Non-replicative Integral Membrane Proteins Encoded by Plant Alpha-Like Viruses: Emergence of Diverse Orphan ORFs and Movement Protein Genes. Front Plant Sci. 2017; 8:1820.
PMC: 5663686.
DOI: 10.3389/fpls.2017.01820.
View
10.
Fort P, Albertini A, Van-Hua A, Berthomieu A, Roche S, Delsuc F
. Fossil rhabdoviral sequences integrated into arthropod genomes: ontogeny, evolution, and potential functionality. Mol Biol Evol. 2011; 29(1):381-90.
DOI: 10.1093/molbev/msr226.
View
11.
Talavera G, Castresana J
. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 2007; 56(4):564-77.
DOI: 10.1080/10635150701472164.
View
12.
Cui J, Holmes E
. Endogenous RNA viruses of plants in insect genomes. Virology. 2012; 427(2):77-9.
PMC: 3725393.
DOI: 10.1016/j.virol.2012.02.014.
View
13.
Qin X, Shi M, Tian J, Lin X, Gao D, He J
. A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors. Proc Natl Acad Sci U S A. 2014; 111(18):6744-9.
PMC: 4020047.
DOI: 10.1073/pnas.1324194111.
View
14.
Lefeuvre P, Martin D, Elena S, Shepherd D, Roumagnac P, Varsani A
. Evolution and ecology of plant viruses. Nat Rev Microbiol. 2019; 17(10):632-644.
DOI: 10.1038/s41579-019-0232-3.
View
15.
Dolja V, Koonin E
. Common origins and host-dependent diversity of plant and animal viromes. Curr Opin Virol. 2012; 1(5):322-31.
PMC: 3293486.
DOI: 10.1016/j.coviro.2011.09.007.
View
16.
Lequime S, Lambrechts L
. Discovery of flavivirus-derived endogenous viral elements in mosquito genomes supports the existence of -associated insect-specific flaviviruses. Virus Evol. 2017; 3(1):vew035.
PMC: 5217911.
DOI: 10.1093/ve/vew035.
View
17.
Huang H, Ye Z, Wang X, Yan X, Zhang Y, He Y
. Diversity and infectivity of the RNA virome among different cryptic species of an agriculturally important insect vector: whitefly Bemisia tabaci. NPJ Biofilms Microbiomes. 2021; 7(1):43.
PMC: 8119434.
DOI: 10.1038/s41522-021-00216-5.
View
18.
Olmedo-Velarde A, Hu J, Melzer M
. A Virus Infecting Represents an Evolutionary Link Between Cileviruses and Higreviruses. Front Microbiol. 2021; 12:660237.
PMC: 8126721.
DOI: 10.3389/fmicb.2021.660237.
View
19.
Kawasaki J, Kojima S, Mukai Y, Tomonaga K, Horie M
. 100-My history of bornavirus infections hidden in vertebrate genomes. Proc Natl Acad Sci U S A. 2021; 118(20).
PMC: 8157955.
DOI: 10.1073/pnas.2026235118.
View
20.
Katoh K, Standley D
. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013; 30(4):772-80.
PMC: 3603318.
DOI: 10.1093/molbev/mst010.
View