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Potent and Specific Antibiotic Combination Therapy Against Clostridioides Difficile

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Journal Nat Chem Biol
Date 2024 Jun 28
PMID 38942968
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Abstract

Keratinicyclins and keratinimicins are recently discovered glycopeptide antibiotics. Keratinimicins show broad-spectrum activity against Gram-positive bacteria, while keratinicyclins form a new chemotype by virtue of an unusual oxazolidinone moiety and exhibit specific antibiosis against Clostridioides difficile. Here we report the mechanism of action of keratinicyclin B (KCB). We find that steric constraints preclude KCB from binding peptidoglycan termini. Instead, KCB inhibits C. difficile growth by binding wall teichoic acids (WTAs) and interfering with cell wall remodeling. A computational model, guided by biochemical studies, provides an image of the interaction of KCB with C. difficile WTAs and shows that the same H-bonding framework used by glycopeptide antibiotics to bind peptidoglycan termini is used by KCB for interacting with WTAs. Analysis of KCB in combination with vancomycin (VAN) shows highly synergistic and specific antimicrobial activity, and that nanomolar combinations of the two drugs are sufficient for complete growth inhibition of C. difficile, while leaving common commensal strains unaffected.

References
1.
Campbell J, Singh A, Santa Maria Jr J, Kim Y, Brown S, Swoboda J . Synthetic lethal compound combinations reveal a fundamental connection between wall teichoic acid and peptidoglycan biosyntheses in Staphylococcus aureus. ACS Chem Biol. 2010; 6(1):106-16. PMC: 3025082. DOI: 10.1021/cb100269f. View

2.
Schaub R, Dillard J . Digestion of Peptidoglycan and Analysis of Soluble Fragments. Bio Protoc. 2017; 7(15). PMC: 5602577. DOI: 10.21769/BioProtoc.2438. View

3.
Kwon Y, Kim H, Kim W . Complestatin exerts antibacterial activity by the inhibition of fatty acid synthesis. Biol Pharm Bull. 2015; 38(5):715-21. DOI: 10.1248/bpb.b14-00824. View

4.
Adams P, Afonine P, Bunkoczi G, Chen V, Davis I, Echols N . PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr. 2010; 66(Pt 2):213-21. PMC: 2815670. DOI: 10.1107/S0907444909052925. View

5.
Lebedev A, Young P, Isupov M, Moroz O, Vagin A, Murshudov G . JLigand: a graphical tool for the CCP4 template-restraint library. Acta Crystallogr D Biol Crystallogr. 2012; 68(Pt 4):431-40. PMC: 3322602. DOI: 10.1107/S090744491200251X. View