» Articles » PMID: 38871815

Optimal Design of Synthetic Circular RNAs

Overview
Journal Exp Mol Med
Date 2024 Jun 13
PMID 38871815
Authors
Affiliations
Soon will be listed here.
Abstract

Circular RNAs are an unusual class of single-stranded RNAs whose ends are covalently linked via back-splicing. Due to their versatility, the need to express circular RNAs in vivo and in vitro has increased. Efforts have been made to efficiently and precisely synthesize circular RNAs. However, a review on the optimization of the processes of circular RNA design, synthesis, and delivery is lacking. Our review highlights the multifaceted aspects considered when producing optimal circular RNAs and summarizes the available options for each step of exogenous circular RNA design and synthesis, including circularization strategies. Additionally, this review describes several potential applications of circular RNAs.

Citing Articles

Exploratory Review and In Silico Insights into circRNA and RNA-Binding Protein Roles in γ-Globin to β-Globin Switching.

Habara A Cells. 2025; 14(4).

PMID: 39996784 PMC: 11854342. DOI: 10.3390/cells14040312.


Circular RNAs in cancer.

Guo Y, Huang Q, Heng Y, Zhou Y, Chen H, Xu C MedComm (2020). 2025; 6(2):e70079.

PMID: 39901896 PMC: 11788016. DOI: 10.1002/mco2.70079.


Circular RNAs in Cardiovascular Diseases: Molecular Mechanisms, Therapeutic Advances, and Innovations.

Yuan Z, Huang S, Jin X, Li S Genes (Basel). 2024; 15(11).

PMID: 39596623 PMC: 11593509. DOI: 10.3390/genes15111423.


In Vitro Self-Circularization Methods Based on Self-Splicing Ribozyme.

Lee K, Lee N, Lee S Int J Mol Sci. 2024; 25(17).

PMID: 39273386 PMC: 11394858. DOI: 10.3390/ijms25179437.


Regulatory RNA: from molecular insights to therapeutic frontiers.

Kim T, Kim T Exp Mol Med. 2024; 56(6):1233-1234.

PMID: 38871813 PMC: 11263535. DOI: 10.1038/s12276-024-01267-2.

References
1.
Kim S, Yoon J, Shishido H, Yang Z, Rooney L, Barral J . Protein folding. Translational tuning optimizes nascent protein folding in cells. Science. 2015; 348(6233):444-8. DOI: 10.1126/science.aaa3974. View

2.
Li X, Liu C, Xue W, Zhang Y, Jiang S, Yin Q . Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection. Mol Cell. 2017; 67(2):214-227.e7. DOI: 10.1016/j.molcel.2017.05.023. View

3.
Meganck R, Borchardt E, Castellanos Rivera R, Scalabrino M, Wilusz J, Marzluff W . Tissue-Dependent Expression and Translation of Circular RNAs with Recombinant AAV Vectors In Vivo. Mol Ther Nucleic Acids. 2018; 13:89-98. PMC: 6154398. DOI: 10.1016/j.omtn.2018.08.008. View

4.
Ivanov A, Memczak S, Wyler E, Torti F, Porath H, Orejuela M . Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals. Cell Rep. 2015; 10(2):170-7. DOI: 10.1016/j.celrep.2014.12.019. View

5.
Zhang M, Xu K, Fu L, Wang Q, Chang Z, Zou H . Revealing Epigenetic Factors of circRNA Expression by Machine Learning in Various Cellular Contexts. iScience. 2020; 23(12):101842. PMC: 7725743. DOI: 10.1016/j.isci.2020.101842. View