Developing Best Practice Public Health Standards for Whole Genome Sequencing of

Overview

Journal Lancet Reg Health West Pac

Date 2024 Jun 3

PMID 38827932

Authors

Justin T Denholm

Marcel A Behr

Gerard de Vries

Richard Anthony

Esther Robinson

Matthijs Backx

Ian F Laurenson

Amie-Louise Seagar

Herns Modestil

Lisa Trieu

Jeanne Sullivan Meissner

Deborah Hee Ling Ng

Jun Yang Tay

Hsien-Ho Lin

Robyn Lee

Ellen J Donnan

Vitali Sintchenko

Ben J Marais

Affiliations

Soon will be listed here.

Citing Articles

Multidrug-resistant tuberculosis clusters and transmission in Taiwan: a population-based cohort study.

Liu K, Xiao Y, Jou R Front Microbiol. 2024; 15:1439532.

PMID: 39360329 PMC: 11445003. DOI: 10.3389/fmicb.2024.1439532.

Sustained transmission over two decades of a previously unrecognised MPT64 negative strain in Queensland, Australia: a whole genome sequencing study.

Bainomugisa A, Pandey S, OConnor B, Syrmis M, Whiley D, Sintchenko V Lancet Reg Health West Pac. 2024; 47:101105.

PMID: 39022748 PMC: 11253042. DOI: 10.1016/j.lanwpc.2024.101105.

References

Saeed F, Mihan R, Mousavi S, Reniers R, Bateni F, Alikhani R . A Narrative Review of Stigma Related to Infectious Disease Outbreaks: What Can Be Learned in the Face of the Covid-19 Pandemic?. Front Psychiatry. 2020; 11:565919. PMC: 7738431. DOI: 10.3389/fpsyt.2020.565919. View

Jajou R, de Neeling A, van Hunen R, de Vries G, Schimmel H, Mulder A . Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study. PLoS One. 2018; 13(4):e0195413. PMC: 5884559. DOI: 10.1371/journal.pone.0195413. View

Dale K, Globan M, Horan K, Sherry N, Ballard S, Tay E . Whole genome sequencing for tuberculosis in Victoria, Australia: A genomic implementation study from 2017 to 2020. Lancet Reg Health West Pac. 2022; 28:100556. PMC: 9405109. DOI: 10.1016/j.lanwpc.2022.100556. View

Sawatzky R, Kwon J, Barclay R, Chauhan C, Frank L, van den Hout W . Implications of response shift for micro-, meso-, and macro-level healthcare decision-making using results of patient-reported outcome measures. Qual Life Res. 2021; 30(12):3343-3357. PMC: 8602130. DOI: 10.1007/s11136-021-02766-9. View

Yang C, Lu L, Warren J, Wu J, Jiang Q, Zuo T . Internal migration and transmission dynamics of tuberculosis in Shanghai, China: an epidemiological, spatial, genomic analysis. Lancet Infect Dis. 2018; 18(7):788-795. PMC: 6035060. DOI: 10.1016/S1473-3099(18)30218-4. View

Kizny Gordon A, Tong S, Martinez E, Crighton T, Denholm J, Sintchenko V . TB genomic surveillance and data sharing in recognising contamination events. Int J Tuberc Lung Dis. 2021; 25(3):241-243. DOI: 10.5588/ijtld.20.0740. View

Berg J, Khoury M, Evans J . Deploying whole genome sequencing in clinical practice and public health: meeting the challenge one bin at a time. Genet Med. 2011; 13(6):499-504. DOI: 10.1097/GIM.0b013e318220aaba. View

Ferdinand A, Kelaher M, Lane C, Goncalves da Silva A, Sherry N, Ballard S . An implementation science approach to evaluating pathogen whole genome sequencing in public health. Genome Med. 2021; 13(1):121. PMC: 8317677. DOI: 10.1186/s13073-021-00934-7. View

Pronyk P, de Alwis R, Rockett R, Basile K, Boucher Y, Pang V . Advancing pathogen genomics in resource-limited settings. Cell Genom. 2023; 3(12):100443. PMC: 10726422. DOI: 10.1016/j.xgen.2023.100443. View

10.

Zhang X, Martinez E, Lam C, Crighton T, Sim E, Gall M . Exploring programmatic indicators of tuberculosis control that incorporate routine sequencing in low incidence settings: a comprehensive (2017-2021) patient cohort analysis. Lancet Reg Health West Pac. 2023; 41:100910. PMC: 10550799. DOI: 10.1016/j.lanwpc.2023.100910. View