» Articles » PMID: 38672495

Advancements in the Application of Ribosomally Synthesized and Post-Translationally Modified Peptides (RiPPs)

Overview
Journal Biomolecules
Publisher MDPI
Date 2024 Apr 27
PMID 38672495
Authors
Affiliations
Soon will be listed here.
Abstract

Ribosomally synthesized and post-translationally modified peptides (RiPPs) represent a significant potential for novel therapeutic applications because of their bioactive properties, stability, and specificity. RiPPs are synthesized on ribosomes, followed by intricate post-translational modifications (PTMs), crucial for their diverse structures and functions. PTMs, such as cyclization, methylation, and proteolysis, play crucial roles in enhancing RiPP stability and bioactivity. Advances in synthetic biology and bioinformatics have significantly advanced the field, introducing new methods for RiPP production and engineering. These methods encompass strategies for heterologous expression, genetic refactoring, and exploiting the substrate tolerance of tailoring enzymes to create novel RiPP analogs with improved or entirely new functions. Furthermore, the introduction and implementation of cutting-edge screening methods, including mRNA display, surface display, and two-hybrid systems, have expedited the identification of RiPPs with significant pharmaceutical potential. This comprehensive review not only discusses the current advancements in RiPP research but also the promising opportunities that leveraging these bioactive peptides for therapeutic applications presents, illustrating the synergy between traditional biochemistry and contemporary synthetic biology and genetic engineering approaches.

Citing Articles

Integrating Metabolomics and Genomics to Uncover Antimicrobial Compounds in UTNGt2, a Cacao-Originating Probiotic from Ecuador.

Molina D, Angamarca E, Marinescu G, Popescu R, Tenea G Antibiotics (Basel). 2025; 14(2).

PMID: 40001367 PMC: 11851819. DOI: 10.3390/antibiotics14020123.


Characterization and Probiotic Potential of DPL5: A Novel Strain Isolated from Human Breast Milk with Antimicrobial Properties Against Biofilm-Forming .

Iliev I, Yahubyan G, Apostolova-Kuzova E, Gozmanova M, Mollova D, Iliev I Microorganisms. 2025; 13(1).

PMID: 39858927 PMC: 11767307. DOI: 10.3390/microorganisms13010160.


Anticancer Ribosomally Synthesized and Post-Translationally Modified Peptides from Plants: Structures, Therapeutic Potential, and Future Directions.

Hwang H, Nam Y, Jang C, Kim E, Jang E, Lee Y Curr Issues Mol Biol. 2025; 47(1).

PMID: 39852121 PMC: 11764418. DOI: 10.3390/cimb47010006.

References
1.
Havarstein L, Diep D, Nes I . A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export. Mol Microbiol. 1995; 16(2):229-40. DOI: 10.1111/j.1365-2958.1995.tb02295.x. View

2.
Frattaruolo L, Lacret R, Cappello A, Truman A . A Genomics-Based Approach Identifies a Thioviridamide-Like Compound with Selective Anticancer Activity. ACS Chem Biol. 2017; 12(11):2815-2822. DOI: 10.1021/acschembio.7b00677. View

3.
Santos-Aberturas J, Chandra G, Frattaruolo L, Lacret R, Pham T, Vior N . Uncovering the unexplored diversity of thioamidated ribosomal peptides in Actinobacteria using the RiPPER genome mining tool. Nucleic Acids Res. 2019; 47(9):4624-4637. PMC: 6511847. DOI: 10.1093/nar/gkz192. View

4.
He B, Cheng Z, Zhong Z, Gao Y, Liu H, Li Y . Expanded Sequence Space of Radical S-Adenosylmethionine-Dependent Enzymes Involved in Post-translational Macrocyclization. Angew Chem Int Ed Engl. 2022; 61(48):e202212447. DOI: 10.1002/anie.202212447. View

5.
Wang H, Li Z, Jia R, Yin J, Li A, Xia L . ExoCET: exonuclease in vitro assembly combined with RecET recombination for highly efficient direct DNA cloning from complex genomes. Nucleic Acids Res. 2017; 46(5):e28. PMC: 5861427. DOI: 10.1093/nar/gkx1249. View