6.
Meier-Kolthoff J, Goker M
. VICTOR: genome-based phylogeny and classification of prokaryotic viruses. Bioinformatics. 2017; 33(21):3396-3404.
PMC: 5860169.
DOI: 10.1093/bioinformatics/btx440.
View
7.
Wattam A, Davis J, Assaf R, Boisvert S, Brettin T, Bun C
. Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res. 2016; 45(D1):D535-D542.
PMC: 5210524.
DOI: 10.1093/nar/gkw1017.
View
8.
McNair K, Bailey B, Edwards R
. PHACTS, a computational approach to classifying the lifestyle of phages. Bioinformatics. 2012; 28(5):614-8.
PMC: 3289917.
DOI: 10.1093/bioinformatics/bts014.
View
9.
Lokareddy R, Hou C, Doll S, Li F, Gillilan R, Forti F
. Terminase Subunits from the Pseudomonas-Phage E217. J Mol Biol. 2022; 434(20):167799.
PMC: 10026623.
DOI: 10.1016/j.jmb.2022.167799.
View
10.
Zimmermann L, Stephens A, Nam S, Rau D, Kubler J, Lozajic M
. A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. J Mol Biol. 2017; 430(15):2237-2243.
DOI: 10.1016/j.jmb.2017.12.007.
View
11.
Song Y, Liu C, Molitoris D, Tomzynski T, Lawson P, Collins M
. Clostridium bolteae sp. nov., isolated from human sources. Syst Appl Microbiol. 2003; 26(1):84-9.
DOI: 10.1078/072320203322337353.
View
12.
Sprotte S, Rasmussen T, Cho G, Brinks E, Lametsch R, Neve H
. Morphological and Genetic Characterization of Bacteriophage PMBT5. Viruses. 2022; 14(8).
PMC: 9394477.
DOI: 10.3390/v14081598.
View
13.
Brettin T, Davis J, Disz T, Edwards R, Gerdes S, Olsen G
. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep. 2015; 5:8365.
PMC: 4322359.
DOI: 10.1038/srep08365.
View
14.
Zuppi M, Hendrickson H, OSullivan J, Vatanen T
. Phages in the Gut Ecosystem. Front Cell Infect Microbiol. 2022; 11:822562.
PMC: 8764184.
DOI: 10.3389/fcimb.2021.822562.
View
15.
Haas K, Blanchard J
. Reclassification of the and clades as gen. nov. and gen. nov., including reclassification of 15 taxa. Int J Syst Evol Microbiol. 2019; 70(1):23-34.
DOI: 10.1099/ijsem.0.003698.
View
16.
Nale J, Redgwell T, Millard A, Clokie M
. Efficacy of an Optimised Bacteriophage Cocktail to Clear Clostridium difficile in a Batch Fermentation Model. Antibiotics (Basel). 2018; 7(1).
PMC: 5872124.
DOI: 10.3390/antibiotics7010013.
View
17.
Kupczok A, Neve H, Huang K, Hoeppner M, Heller K, Franz C
. Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades. Mol Biol Evol. 2018; 35(5):1147-1159.
PMC: 5913663.
DOI: 10.1093/molbev/msy027.
View
18.
Lowe T, Eddy S
. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 1997; 25(5):955-64.
PMC: 146525.
DOI: 10.1093/nar/25.5.955.
View
19.
Akhwale J, Rohde M, Rohde C, Bunk B, Sproer C, Boga H
. Isolation, characterization and analysis of bacteriophages from the haloalkaline lake Elmenteita, Kenya. PLoS One. 2019; 14(4):e0215734.
PMC: 6483233.
DOI: 10.1371/journal.pone.0215734.
View
20.
Yu G
. Using ggtree to Visualize Data on Tree-Like Structures. Curr Protoc Bioinformatics. 2020; 69(1):e96.
DOI: 10.1002/cpbi.96.
View