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Identification and Validation of an Immune-derived Multiple Programmed Cell Death Index for Predicting Clinical Outcomes, Molecular Subtyping, and Drug Sensitivity in Lung Adenocarcinoma

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Specialty Oncology
Date 2024 Apr 2
PMID 38563847
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Abstract

Objectives: Comprehensive cross-interaction of multiple programmed cell death (PCD) patterns in the patients with lung adenocarcinoma (LUAD) have not yet been thoroughly investigated.

Methods: Here, we collected 19 different PCD patterns, including 1911 PCD-related genes, and developed an immune-derived multiple programmed cell death index (MPCDI) based on machine learning methods.

Results: Using the median MPCDI scores, we categorized the LUAD patients into two groups: low-MPCDI and high-MPCDI. Our analysis of the TCGA-LUAD training cohort and three external GEO cohorts (GSE37745, GSE30219, and GSE68465) revealed that patients with high-MPCDI experienced a more unfavorable prognosis, whereas those with low-MPCDI had a better prognosis. Furthermore, the results of both univariate and multivariate Cox regression analyses further confirmed that MPCDI serves as a novel independent risk factor. By combining clinical characteristics with the MPCDI, we constructed a nomogram that provides an accurate and reliable quantitative tool for personalized clinical management of LUAD patients. The findings obtained from the analysis of C-index and the decision curve revealed that the nomogram outperformed various clinical variables in terms of net clinical benefit. Encouragingly, the low-MPCDI patients are more sensitive to commonly used chemotherapy drugs, which suggests that MPCDI scores have a guiding role in chemotherapy for LUAD patients.

Conclusion: Therefore, MPCDI can be used as a novel clinical diagnostic classifier, providing valuable insights into the clinical management and clinical decision-making for LUAD patients.

References
1.
Xu J, Zhang C, Wang X, Zhai L, Ma Y, Mao Y . Integrative Proteomic Characterization of Human Lung Adenocarcinoma. Cell. 2020; 182(1):245-261.e17. DOI: 10.1016/j.cell.2020.05.043. View

2.
Wang Y, Liu B, Min Q, Yang X, Yan S, Ma Y . Spatial transcriptomics delineates molecular features and cellular plasticity in lung adenocarcinoma progression. Cell Discov. 2023; 9(1):96. PMC: 10507052. DOI: 10.1038/s41421-023-00591-7. View

3.
Hung J, Jeng W, Chou T, Hsu W, Wu K, Huang B . Prognostic value of the new International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society lung adenocarcinoma classification on death and recurrence in completely resected stage I lung adenocarcinoma. Ann Surg. 2013; 258(6):1079-86. DOI: 10.1097/SLA.0b013e31828920c0. View

4.
De Smet C . DNA methylation profiling in early lung adenocarcinoma to predict response to immunotherapy. Transl Lung Cancer Res. 2023; 12(4):657-660. PMC: 10183395. DOI: 10.21037/tlcr-23-96. View

5.
Galluzzi L, Vitale I, Aaronson S, Abrams J, Adam D, Agostinis P . Molecular mechanisms of cell death: recommendations of the Nomenclature Committee on Cell Death 2018. Cell Death Differ. 2018; 25(3):486-541. PMC: 5864239. DOI: 10.1038/s41418-017-0012-4. View