Encodes a DYW-type Pentatricopeptide Repeat Protein Involved in Chloroplast RNA Processing and Regulated Chloroplast Development

Overview

Journal Mol Breed

Specialties Biotechnology
Molecular Biology

Date 2024 Mar 29

PMID 38549701

Authors

Min Xu

Xinying Zhang

Jinzhe Cao

Jiali Liu

Yiyuan He

Qingjie Guan

Xiaojie Tian

Jiaqi Tang

Xiufeng Li

Deyong Ren

Qingyun Bu

Zhenyu Wang

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-024-01468-7.

References

Zhang J, Guo Y, Fang Q, Zhu Y, Zhang Y, Liu X . The PPR-SMR Protein ATP4 Is Required for Editing the Chloroplast mRNA in Rice and Maize. Plant Physiol. 2020; 184(4):2011-2021. PMC: 7723101. DOI: 10.1104/pp.20.00849. View

Toda T, Fujii S, Noguchi K, Kazama T, Toriyama K . Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria. Plant J. 2012; 72(3):450-60. DOI: 10.1111/j.1365-313X.2012.05091.x. View

Colcombet J, Lopez-Obando M, Heurtevin L, Bernard C, Martin K, Berthome R . Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles. RNA Biol. 2013; 10(9):1557-75. PMC: 3858439. DOI: 10.4161/rna.26128. View

Swiatecka-Hagenbruch M, Emanuel C, Hedtke B, Liere K, Borner T . Impaired function of the phage-type RNA polymerase RpoTp in transcription of chloroplast genes is compensated by a second phage-type RNA polymerase. Nucleic Acids Res. 2007; 36(3):785-92. PMC: 2241911. DOI: 10.1093/nar/gkm1111. View

Wu L, Wu J, Liu Y, Gong X, Xu J, Lin D . The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress. Rice (N Y). 2016; 9(1):67. PMC: 5133210. DOI: 10.1186/s12284-016-0134-1. View

Pfalz J, Liere K, Kandlbinder A, Dietz K, Oelmuller R . pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Plant Cell. 2005; 18(1):176-97. PMC: 1323492. DOI: 10.1105/tpc.105.036392. View

Nellaepalli S, Ozawa S, Kuroda H, Takahashi Y . The photosystem I assembly apparatus consisting of Ycf3-Y3IP1 and Ycf4 modules. Nat Commun. 2018; 9(1):2439. PMC: 6015050. DOI: 10.1038/s41467-018-04823-3. View

Lerbs-Mache S . Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?. Plant Mol Biol. 2010; 76(3-5):235-49. DOI: 10.1007/s11103-010-9714-4. View

Gothandam K, Kim E, Cho H, Chung Y . OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis. Plant Mol Biol. 2005; 58(3):421-33. DOI: 10.1007/s11103-005-5702-5. View

10.

Tan J, Tan Z, Wu F, Sheng P, Heng Y, Wang X . A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice. Mol Plant. 2014; 7(8):1329-1349. DOI: 10.1093/mp/ssu054. View

11.

Lan J, Lin Q, Zhou C, Liu X, Miao R, Ma T . Young Leaf White Stripe encodes a P-type PPR protein required for chloroplast development. J Integr Plant Biol. 2023; 65(7):1687-1702. DOI: 10.1111/jipb.13477. View

12.

Wang X, An Y, Xu P, Xiao J . Functioning of PPR Proteins in Organelle RNA Metabolism and Chloroplast Biogenesis. Front Plant Sci. 2021; 12:627501. PMC: 7900629. DOI: 10.3389/fpls.2021.627501. View

13.

Shen C, Zhang D, Guan Z, Liu Y, Yang Z, Yang Y . Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins. Nat Commun. 2016; 7:11285. PMC: 4837458. DOI: 10.1038/ncomms11285. View

14.

Liu X, Zhang X, Cao R, Jiao G, Hu S, Shao G . CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice. J Integr Plant Biol. 2021; 63(10):1724-1739. DOI: 10.1111/jipb.13147. View

15.

Lv Y, Wang Y, Zhang Q, Chen C, Qian Q, Guo L . WAL3 encoding a PLS-type PPR protein regulates chloroplast development in rice. Plant Sci. 2022; 323:111382. DOI: 10.1016/j.plantsci.2022.111382. View

16.

Tang J, Zhang W, Wen K, Chen G, Sun J, Tian Y . OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice. Plant Mol Biol. 2017; 95(4-5):345-357. DOI: 10.1007/s11103-017-0654-0. View

17.

Su N, Hu M, Wu D, Wu F, Fei G, Lan Y . Disruption of a rice pentatricopeptide repeat protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production. Plant Physiol. 2012; 159(1):227-38. PMC: 3366715. DOI: 10.1104/pp.112.195081. View

18.

Chen L, Huang L, Dai L, Gao Y, Zou W, Lu X . PALE-GREEN LEAF12 Encodes a Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA Processing in Rice. Plant Cell Physiol. 2018; 60(3):587-598. DOI: 10.1093/pcp/pcy229. View

19.

Hayes M, Dang K, Diaz M, Mulligan R . A conserved glutamate residue in the C-terminal deaminase domain of pentatricopeptide repeat proteins is required for RNA editing activity. J Biol Chem. 2015; 290(16):10136-42. PMC: 4400329. DOI: 10.1074/jbc.M114.631630. View

20.

Okuda K, Myouga F, Motohashi R, Shinozaki K, Shikanai T . Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proc Natl Acad Sci U S A. 2007; 104(19):8178-83. PMC: 1876591. DOI: 10.1073/pnas.0700865104. View