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Draft Genome Sequences of Spp. Isolates from New Zealand Environmental Sources

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Abstract

is often used as a fecal indicator bacterium for water quality monitoring. We report the draft genome sequences of 500 isolates including newly described species, namely , and , obtained from diverse environmental sources to assist with improved public health risk assessments.

References
1.
Souvorov A, Agarwala R, Lipman D . SKESA: strategic k-mer extension for scrupulous assemblies. Genome Biol. 2018; 19(1):153. PMC: 6172800. DOI: 10.1186/s13059-018-1540-z. View

2.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki E, Zaslavsky L . NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 2016; 44(14):6614-24. PMC: 5001611. DOI: 10.1093/nar/gkw569. View

3.
Clermont O, Christenson J, Denamur E, Gordon D . The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. Environ Microbiol Rep. 2013; 5(1):58-65. DOI: 10.1111/1758-2229.12019. View

4.
Walk S, Alm E, Gordon D, Ram J, Toranzos G, Tiedje J . Cryptic lineages of the genus Escherichia. Appl Environ Microbiol. 2009; 75(20):6534-44. PMC: 2765150. DOI: 10.1128/AEM.01262-09. View

5.
van der Putten B, Matamoros S, Mende D, Scholl E, Consortium C, Schultsz C . sp. nov., a novel Gram-stain-negative bacterium, isolated from a faecal sample of an international traveller. Int J Syst Evol Microbiol. 2021; 71(2). PMC: 8346766. DOI: 10.1099/ijsem.0.004609. View