» Articles » PMID: 38333003

Computational Studies on 6-Pyruvoyl Tetrahydropterin Synthase (6-PTPS) of

Overview
Publisher Sage Publications
Specialty Biology
Date 2024 Feb 9
PMID 38333003
Authors
Affiliations
Soon will be listed here.
Abstract

6-Pyruvoyl tetrahydropterin synthase (6-PTPS) is a lyase involved in the synthesis of tetrahydrobiopterin. In species where dihydroneopterin aldolase (DHNA) is absent, it acts in the folate biosynthetic pathway necessary for the growth and survival of the parasite. The 6-pyruvoyl tetrahydropterin synthase of (PTPS) has been identified as a potential antimalarial drug target. This study identified potential inhibitors of PTPS using molecular docking techniques. Molecular docking and virtual screening of 62 compounds including the control to the deposited Protein Data Bank (PDB) structure was carried out using AutoDock Vina in PyRx. Five of the compounds, -dimethyl-'-[4-oxo-6-(2,2,5-trimethyl-1,3-dioxolan-4-yl)-3H-pteridin-2-yl]methanimidamide (140296439), 2-amino-6-[(1R)-3-cyclohexyl-1-hydroxypropyl]-3H-pteridin-4-one (140296495), 2-(2,3-dihydroxypropyl)-8,9-dihydro-6H-pyrimido[2,1-b]pteridine-7,11-dione (144380406), 2-(dimethylamino)-6-[(2,2-dimethyl-1,3-dioxolan-4-yl)-hydroxymethyl]-3H-pteridin-4-one (135573878), and [1-acetyloxy-1-(2-methyl-4-oxo-3H-pteridin-6-yl)propan-2-yl] acetate (136075207), showed better binding affinity than the control ligand, biopterin (135449517), and were selected and screened. Three conformers of 140296439 with the binding energy of -7.2, -7.1, and -7.0 kcal/mol along with 140296495 were better than the control at -5.7 kcal/mol. In silico absorption, distribution, metabolism, excretion, and toxicity (ADMET) studies predicted good pharmacokinetic properties of all the compounds while reporting a high risk of irritant toxicity in 140296439 and 144380406. The study highlights the five compounds, 140296439, 140296495, 144380406, 135573878 and 136075207, as potential inhibitors of PfPTPS and possible compounds for antimalarial drug development.

Citing Articles

Molecular Docking Appraisal of Phytochemicals as Potential Inhibitors of PI3K/Akt Pathway for Breast Cancer Treatment.

Effiong M, Bella-Omunagbe M, Afolabi I, Chinedu S Bioinform Biol Insights. 2025; 19:11779322251316864.

PMID: 39906062 PMC: 11792010. DOI: 10.1177/11779322251316864.


Core-genome guided novel therapeutic targets identification and chimeric vaccine designing against Rickettsia rickettsii.

Arshad F, Sarfraz A, Shehroz M, Nishan U, Perveen A, Ullah R Sci Rep. 2025; 15(1):921.

PMID: 39762342 PMC: 11704189. DOI: 10.1038/s41598-024-83395-3.

References
1.
Panda S, Chandra G . Physicochemical characterization and functional analysis of some snake venom toxin proteins and related non-toxin proteins of other chordates. Bioinformation. 2012; 8(18):891-6. PMC: 3489095. DOI: 10.6026/97320630008891. View

2.
Happi C, Gbotosho G, Folarin O, Akinboye D, Yusuf B, Ebong O . Polymorphisms in Plasmodium falciparum dhfr and dhps genes and age related in vivo sulfadoxine-pyrimethamine resistance in malaria-infected patients from Nigeria. Acta Trop. 2005; 95(3):183-93. DOI: 10.1016/j.actatropica.2005.06.015. View

3.
Dallakyan S, Olson A . Small-molecule library screening by docking with PyRx. Methods Mol Biol. 2015; 1263:243-50. DOI: 10.1007/978-1-4939-2269-7_19. View

4.
Baptista V, Costa M, Calcada C, Silva M, Gil J, Veiga M . The Future in Sensing Technologies for Malaria Surveillance: A Review of Hemozoin-Based Diagnosis. ACS Sens. 2021; 6(11):3898-3911. DOI: 10.1021/acssensors.1c01750. View

5.
Katsila T, Spyroulias G, Patrinos G, Matsoukas M . Computational approaches in target identification and drug discovery. Comput Struct Biotechnol J. 2016; 14:177-84. PMC: 4887558. DOI: 10.1016/j.csbj.2016.04.004. View