Complete Genome Sequence of a Novel Papillomavirus in Siamese Fighting Fish () from Trinidad and Tobago

Overview

Journal Microbiol Resour Announc

Publisher American Society for Microbiology

Specialty Microbiology

Date 2024 Feb 1

PMID 38299841

Authors

Lemar Blake

A Carla Phillips Savage

Esteban Soto

Christopher Oura

Arianne Brown-Jordan

Clayton Raines

Christopher B Buck

Luke R Iwanowicz

Affiliations

Soon will be listed here.

Abstract

Here, we announce the complete genome of a previously undescribed papillomavirus from a betta fish, . The genome is 5,671 bp with a GC content of 38.2%. Variants were detected in public databases. This genome is most similar to papillomaviruses that infect sea bass (52.9 % nucleotide identity).

References

Kraberger S, Austin C, Farkas K, Desvignes T, Postlethwait J, Fontenele R . Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market. Virology. 2021; 565:65-72. PMC: 8713439. DOI: 10.1016/j.virol.2021.10.007. View

Li D, Liu C, Luo R, Sadakane K, Lam T . MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics. 2015; 31(10):1674-6. DOI: 10.1093/bioinformatics/btv033. View

Gibson-Kueh S, Netto P, Ngoh-Lim G, Chang S, Ho L, Qin Q . The pathology of systemic iridoviral disease in fish. J Comp Pathol. 2003; 129(2-3):111-9. DOI: 10.1016/s0021-9975(03)00010-0. View

Gaynor A, Fish S, Duerr R, Dela Cruz Jr F, Pesavento P . Identification of a novel papillomavirus in a Northern Fulmar (Fulmarus glacialis) with viral production in cartilage. Vet Pathol. 2014; 52(3):553-61. DOI: 10.1177/0300985814542812. View

Muhire B, Varsani A, Martin D . SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One. 2014; 9(9):e108277. PMC: 4178126. DOI: 10.1371/journal.pone.0108277. View

Letunic I, Bork P . Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res. 2019; 47(W1):W256-W259. PMC: 6602468. DOI: 10.1093/nar/gkz239. View

Tisza M, Belford A, Dominguez-Huerta G, Bolduc B, Buck C . Cenote-Taker 2 democratizes virus discovery and sequence annotation. Virus Evol. 2021; 7(1):veaa100. PMC: 7816666. DOI: 10.1093/ve/veaa100. View

Trifinopoulos J, Nguyen L, von Haeseler A, Minh B . W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 2016; 44(W1):W232-5. PMC: 4987875. DOI: 10.1093/nar/gkw256. View

Oros J, Priestnall S, Suarez-Bonnet A . Histopathological description of iridophoromas resembling skin nodule syndrome in Siamese fighting fish Betta splendens. Dis Aquat Organ. 2022; 151:23-27. DOI: 10.3354/dao03686. View

10.

Edgar R . MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004; 32(5):1792-7. PMC: 390337. DOI: 10.1093/nar/gkh340. View

11.

Lopez-Bueno A, Mavian C, Labella A, Castro D, Borrego J, Alcami A . Concurrence of Iridovirus, Polyomavirus, and a Unique Member of a New Group of Fish Papillomaviruses in Lymphocystis Disease-Affected Gilthead Sea Bream. J Virol. 2016; 90(19):8768-79. PMC: 5021401. DOI: 10.1128/JVI.01369-16. View

12.

Novotny L, Halouzka R, Matlova L, Vavra O, Bartosova L, Slany M . Morphology and distribution of granulomatous inflammation in freshwater ornamental fish infected with mycobacteria. J Fish Dis. 2010; 33(12):947-55. DOI: 10.1111/j.1365-2761.2010.01202.x. View

13.

Iwanowicz L, Young K, Adams C, Blazer V, Smith G, Scott Cornman R . Draft Genome Sequence of an Adomavirus Associated with Raised Mucoid Skin Lesions on Smallmouth Bass (Micropterus dolomieu). Microbiol Resour Announc. 2020; 9(14). PMC: 7118190. DOI: 10.1128/MRA.01479-19. View

14.

Surjan A, Fonagy E, Eszterbauer E, Harrach B, Doszpoly A . Complete genome sequence of a novel fish papillomavirus detected in farmed wels catfish (Silurus glanis). Arch Virol. 2021; 166(9):2603-2606. PMC: 8321979. DOI: 10.1007/s00705-021-05123-w. View