Small Molecule Approaches to Targeting RNA
Overview
Authors
Affiliations
The development of innovative methodologies to identify RNA binders has attracted enormous attention in chemical biology and drug discovery. Although antibiotics targeting bacterial ribosomal RNA have been on the market for decades, the renewed interest in RNA targeting reflects the need to better understand complex intracellular processes involving RNA. In this context, small molecules are privileged tools used to explore the biological functions of RNA and to validate RNAs as therapeutic targets, and they eventually are to become new drugs. Despite recent progress, the rational design of specific RNA binders requires a better understanding of the interactions which occur with the RNA target to reach the desired biological response. In this Review, we discuss the challenges to approaching this underexplored chemical space, together with recent strategies to bind, interact and affect biologically relevant RNAs.
Small molecules reveal differential shifts in stability and protein binding for G-quadruplex RNA.
Martyr J, Zafferani M, Bailey M, Zorawski M, Montalvan N, Muralidharan D bioRxiv. 2025; .
PMID: 39990451 PMC: 11844376. DOI: 10.1101/2025.02.10.637408.
Perspectives on Applications of F-NMR in Fragment-Based Drug Discovery.
Li Q, Kang C Molecules. 2024; 29(23).
PMID: 39683906 PMC: 11643073. DOI: 10.3390/molecules29235748.
Yuan Z, Huang S, Jin X, Li S Genes (Basel). 2024; 15(11).
PMID: 39596623 PMC: 11593509. DOI: 10.3390/genes15111423.
Regulatory RNAs: role as scaffolds assembling protein complexes and their epigenetic deregulation.
Poltronieri P Explor Target Antitumor Ther. 2024; 5(4):841-876.
PMID: 39280246 PMC: 11390297. DOI: 10.37349/etat.2024.00252.
Structure of Essential RNA Regulatory Elements in the West Nile Virus 3'-Terminal Stem Loop.
Zhu Y, Chaubey B, Olsen G, Varani G J Mol Biol. 2024; 436(22):168767.
PMID: 39214284 PMC: 11563921. DOI: 10.1016/j.jmb.2024.168767.