» Articles » PMID: 38274093

Computational Analysis of RNA Methyltransferase Rv3366 As a Potential Drug Target for Combating Drug-resistant

Overview
Specialty Biology
Date 2024 Jan 26
PMID 38274093
Authors
Affiliations
Soon will be listed here.
Abstract

() remains a formidable global health threat. The increasing drug resistance among clinical isolates is exacerbating the current tuberculosis (TB) burden. In this study we focused on identifying novel repurposed drugs that could be further investigated as potential anti-TB drugs. We utilized RNA methyltransferase Rv3366 (spoU) as a potential drug target due to its imperative activity in RNA modification and no structural homology with human proteins. Using computational modeling approaches the structure of Rv3366 was determined followed by high throughput virtual screening of Food and Drug Administration (FDA) approved drugs to screen potential binders of Rv3366. Molecular dynamics (MD) simulations were performed to assess the drug-protein binding interactions, complex stability and rigidity. Through this multi-step structure-based drug repurposing workflow two promising inhibitors of Rv3366 were identified, namely, Levodopa and Droxidopa. This study highlights the significance of targeting RNA methyltransferases to combat drug-resistant . and proposes Levodopa and Droxidopa as promising inhibitors of Rv3366 for future pre-clinical investigations.

References
1.
Xuan J, Sun W, Lin P, Zhou K, Liu S, Zheng L . RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data. Nucleic Acids Res. 2017; 46(D1):D327-D334. PMC: 5753293. DOI: 10.1093/nar/gkx934. View

2.
Demirci H, Murphy 4th F, Belardinelli R, Kelley A, Ramakrishnan V, Gregory S . Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function. RNA. 2010; 16(12):2319-24. PMC: 2995393. DOI: 10.1261/rna.2357210. View

3.
Sharma K, Ahmed F, Sharma T, Grover A, Agarwal M, Grover S . Potential Repurposed Drug Candidates for Tuberculosis Treatment: Progress and Update of Drugs Identified in Over a Decade. ACS Omega. 2023; 8(20):17362-17380. PMC: 10210030. DOI: 10.1021/acsomega.2c05511. View

4.
Selvapandiyan A, Puri N, Kumar P, Alam A, Ehtesham N, Griffin G . Zooming in on common immune evasion mechanisms of pathogens in phagolysosomes: potential broad-spectrum therapeutic targets against infectious diseases. FEMS Microbiol Rev. 2022; 47(1). DOI: 10.1093/femsre/fuac041. View

5.
Kumar A, Kumar S, Taneja B . The structure of Rv2372c identifies an RsmE-like methyltransferase from Mycobacterium tuberculosis. Acta Crystallogr D Biol Crystallogr. 2014; 70(Pt 3):821-32. DOI: 10.1107/S1399004713033555. View